Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0780 ATGGACTCACTGAGGTTGCTGGTGCCTCCATGGCTTGAACCTCTCCTCCACACACAGTTCTTCACCGTGTGCCGGACTCACGCCGATGCAGCCAGAAGTGAATGCAACATGTTTTGCCTCGATTGCAATGGTGCTTGTGGTGCCTTTTGCTTCTATTGCCGTTCTTCAAAGCACAAAGATCATCAAGTCATTCAGATAAGAAGATCTTCATATCATGATGTGGTGAGGGTAACAGAGATTCAGAATGTGTTGGATATAACTGGAGTTCAGACTTATGTGATCAACAGTGCTAGAGTTTTGTTCCTGAATGAGAGGCCTCAACCAAAATCTGGAAAAGGGGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCGTTTCGGTTCTGTTCTTTAGGGTGTAAGCTTGAAGGAATCAAGAAAAATGGGGATGCAAGCTTTGTTTTGGGGGTAAAGAATGAAGAGTTGATGATGACAATGGACACTAGTACCACCTCCTCTAGATCACAGCAAGAAGAATTGCGTGAAGGCTCAACTCAAGACATGTATCCGGCCACGCCTTCTCCACCTCCTTCAAGTGCAAGAAGAAGAAAAGGCATTCCCCATAGGGCTCCTTTTGGTTCCTAA 633 0.4566 MDSLRLLVPPWLEPLLHTQFFTVCRTHADAARSECNMFCLDCNGACGAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVTEIQNVLDITGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKNEELMMTMDTSTTSSRSQQEELREGSTQDMYPATPSPPPSSARRRKGIPHRAPFGS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0780 210 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 209 - -
Lja1g0780 210 MobiDBLite consensus disorder prediction 162 210 - -
Lja1g0780 210 Pfam PLATZ transcription factor 67 138 IPR006734 -
Lja1g0780 210 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 209 - -
Lja1g0780 210 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0780 Lja-Chr1 7553900 7555707 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lja1g0780 PLATZ 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0780 - - gmx:100803076 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0780 1 7553900 7555707 Lja5g2567 5 50660272 50662167 PCT