Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0761 ATGGATTGGAATTGGAATGAGAGCACAACAACCTTCGTTCCTCAGACAGACCCTTCCTACAGCTTCTTCTACAACTATAACAACAGCAACAGCCACCATAATTCAGGAATGGAAGTGAAACAACCAGCATTGACCGAGACATCACAAAGGTCACTGTCGCGGATGGACAGCGAGAACAATGGAAGCCGAGAGAAGAAGAGGAGATTAACAAGTGAGCAGATGGAGTCACTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGATCCTGAAAGGAAGACGAAGCTTTCTAAGGAGCTAGGACTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAACAGGCGCTCCAGGTGGAAGACCAAGCAACTTGAGCACTTGTACGACGTGCTTAGACAAGAGTTTGATGTCATCTCCAAGGAAAAGCACAAGCTCCAACAAGAGGTTATGATGTTGAAGGCAAGATTAAGAGAGCAGCAATGTTATAATAGGATGCAAACGTTGGGTGGTTATAGAGAAATATCTGGGGAAGAAACAGAAGAAAGTACATTAGAGGCACTGCGTGGTTCCAACAAGAGTAGCATTCAACAGGCTGAAGAGGGTTACTGTTCTTTCACTATGGAGGATTATAACACAGTTTCAATTATGCCTTATTATCCCTAA 657 0.4429 MDWNWNESTTTFVPQTDPSYSFFYNYNNSNSHHNSGMEVKQPALTETSQRSLSRMDSENNGSREKKRRLTSEQMESLERSFQEEIKLDPERKTKLSKELGLQPRQIAVWFQNRRSRWKTKQLEHLYDVLRQEFDVISKEKHKLQQEVMMLKARLREQQCYNRMQTLGGYREISGEETEESTLEALRGSNKSSIQQAEEGYCSFTMEDYNTVSIMPYYP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0761 218 CDD homeodomain 63 121 IPR001356 GO:0003677
Lja1g0761 218 Coils Coil 126 146 - -
Lja1g0761 218 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lja1g0761 218 MobiDBLite consensus disorder prediction 33 75 - -
Lja1g0761 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 215 IPR045224 GO:0003700
Lja1g0761 218 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lja1g0761 218 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lja1g0761 218 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 4 215 - -
Lja1g0761 218 SUPERFAMILY Homeodomain-like 49 122 IPR009057 -
Lja1g0761 218 MobiDBLite consensus disorder prediction 33 56 - -
Lja1g0761 218 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lja1g0761 218 MobiDBLite consensus disorder prediction 57 75 - -
Lja1g0761 218 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Lja1g0761 218 SMART HOX_1 63 124 IPR001356 GO:0003677
Lja1g0761 218 Gene3D - 62 125 - -
Lja1g0761 218 Pfam Homeodomain 63 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0761 Lja-Chr1 7389305 7390787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0761 9 165 Homeobox Transcription Factor Family AT2G36610 46.286 3.37e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g0761 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0761 - - lja:Lj1g3v4693000.1 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0761 1 7389305 7390787 Lja1g0761 1 7389305 7390787 ECH
Lja5g2553 5 50155713 50157354 Lja1g0761 1 7389305 7390787 PCT