Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0758 ATGATGGAACCCAATGGACTAGGTGGTGGGATTTTTCCTACCATCAGTAGTAGTGGATTGCTTGGAGTAGAAAACCAAAACCCTTTAAACCAACAAAATCATCACCAAAACCCTCTTCCTCTACATCACCATAGCCAAATGCTTTCTTATGCCACTACCCACCATGACAACACTGACACACACATTCAACAGCCAATCAAACATGGGTACCCCTATTCAGCCAAGACAAACAACAACAACAGCAACGGTACCAATAACAACAGCAACAACAAGGCACAGAGCAATATCAATCTCAGTGATGAGGATGAGTTTGCAGCAGATGACAACAGCTCAGCAGACCCCAAGAGGAAAAACTCACCATGGCATAGAATGAAGTGGACGGACACCATGGTCAGGCTCTTGATAATGGCGGTTTATTACATTGGAGATGAAGCTGGTGGAGGATCAGAAGGAGGGAGTGACCCTGCTGGGAAGAAGAAAGCTACTGGCTTGCTGCAGAAGAAAGGGAAGTGGAAATCGGTGTCCAGGGCCATGATGGAAAAGGGGTACTATGTTTCTCCTCAGCAATGTGAGGACAAGTTCAATGATCTGAACAAAAGGTACAAGAGGGTCAATGATATTCTAGGAAAAGGAACAGCTTGCAGGGTTGTGGAGAATCAGAGTTTGCTGGACACCATGGATTTGTCTCCCAAGATGAAAGAAGAAGCAAGGAAGCTTCTCAACTCCAAGCACCTTTTCTTCAGGGAAATGTGTGCTTACCACAACAGTTGTGGCCATGGAACCAACAACAATGCTGGTGGCACTTCTTCCAATGGTCAAACAGAGGCTGGAACCGAGTCTTTGCCACAACAACAACAGCAACATAAGTGTTTGCATAACGGGGTGGGGAGTCTGAGAATGTTGAAGGAGAAAAGTGGGGAATTAGAGGAAGAGGAAGAGGAGATTGAGGATGATGAGTGGGAGGATTCTTCTTCTGAGGAGGAAGGGGAATCAGGGTCAAAGGGTCAAGCAGAGGAGGATGAGAATTGGAACAATGATGTTGTGAGGAAGAGGGCAAGGAAAAGTGGGGTTATGCCATCACAGGTGATGCAACAGTTGAGTAGTGAGGTGAGTGGTGTGTTGCAAGATGGGGGGAAGAGTGCTTGGGAGAAAAAGCAGTGGATGAAGAAGAGGATGGTGCAGTTGGATGAGCAACAAGTGAGTTATAGAGCCGAGGCGTTTGAGCTGGAAAAGCAAAGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGACACAAGCTTGAAAATGAACGGAGCAGGTTGGAAATTGAAAGAATGATTCTTTTACTTCGCCACAAGGAGCTTGAGTTGATGAATATTCAGCAGCAGCAACAGCATTCTTCTACCTAA 1404 0.4601 MMEPNGLGGGIFPTISSSGLLGVENQNPLNQQNHHQNPLPLHHHSQMLSYATTHHDNTDTHIQQPIKHGYPYSAKTNNNNSNGTNNNSNNKAQSNINLSDEDEFAADDNSSADPKRKNSPWHRMKWTDTMVRLLIMAVYYIGDEAGGGSEGGSDPAGKKKATGLLQKKGKWKSVSRAMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEARKLLNSKHLFFREMCAYHNSCGHGTNNNAGGTSSNGQTEAGTESLPQQQQQHKCLHNGVGSLRMLKEKSGELEEEEEEIEDDEWEDSSSEEEGESGSKGQAEEDENWNNDVVRKRARKSGVMPSQVMQQLSSEVSGVLQDGGKSAWEKKQWMKKRMVQLDEQQVSYRAEAFELEKQRLKWARFSSKKEREMERHKLENERSRLEIERMILLLRHKELELMNIQQQQQHSST* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0758 467 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 2 467 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 303 377 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 307 326 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 60 94 - -
Lja1g0758 467 PANTHER F16F4.11 PROTEIN-RELATED 2 467 - -
Lja1g0758 467 Coils Coil 298 328 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 358 374 - -
Lja1g0758 467 Coils Coil 420 449 - -
Lja1g0758 467 Pfam Myb/SANT-like DNA-binding domain 123 252 IPR044822 -
Lja1g0758 467 MobiDBLite consensus disorder prediction 327 353 - -
Lja1g0758 467 Gene3D - 126 203 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 70 94 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 263 288 - -
Lja1g0758 467 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0758 Lja-Chr1 7367798 7369574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g0758 Myb_DNA-bind_4 1.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0758 - - aprc:113863792 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0758 1 7367798 7369574 Lja1g0758 1 7367798 7369574 ECH
Lja1g0758 1 7367798 7369574 Lja5g2552 5 50132934 50135018 PCT