Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g0754 | ATGGCGGAACGCGGTGGAGGCGAACGCGGCGGAGGCGATCGCGGTGGCTTCGGACGAGGCTTCGGTGGCCGAGGACGCGGAGGCCGTAGAAGAGGCGCAGGCCGCCGCGATGAGGAGGAGAAGTGGGTTCCAGTGACGAAACTCGGTCGTCTAGTGAGGGATGGGAAAATCCGCAGCTTGGAGCAGATCTACCTTCACTCTCTCCCCATCAAGGAGCACCAGATCATCGACACCCTCGTGGGACCCACGCTCAAGGACGAGGTGATGAAGATCATGCCAGTCCAGAAGCAGACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCTTTCGTCGTCGTCGGCGTGAAGTGCAGCAAGGAAGTCGCCACCGCCATCCGCGGCGGAATCATATTGGCGAAGCTTTCTGTGATCCCCGTCAGGAGGGGGTACTGGGGGAACAAGATTGGGAAGCCCCACACTGTTCCGTGCAAGGTGACAGGGAAGTGTGGTTCCGTAACTGTCAGAATGGTTCCAGCGCCTCGTGGTTCGGGAATCGTGGCTGCTAGGGTTCCAAAGAAGGTGTTGCAGTTCGCTGGGATTGATGATGTCTTCACTTCTTCCAGAGGATCCACCAAGACACTCGGCAATTTCGTCAAGGCAACTTTTGACTGTTTGCTGAAAACCTACAGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACACAGATCTGTTGGCTAAGCCAACTGCAAAGGCTCTAATCTTGGAGGAGGAAAGGGTGGATGCTTGA | 792 | 0.5669 | MAERGGGERGGGDRGGFGRGFGGRGRGGRRRGAGRRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYSFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA* | 264 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g0754 | 263 | TIGRFAM | uS5_euk_arch: ribosomal protein uS5 | 37 | 235 | IPR005711 | GO:0003735|GO:0006412|GO:0015935 | |
Lja1g0754 | 263 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 151 | 231 | IPR020568 | - | |
Lja1g0754 | 263 | PANTHER | RIBOSOMAL S SUBUNIT | 8 | 261 | IPR000851 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Lja1g0754 | 263 | SUPERFAMILY | dsRNA-binding domain-like | 80 | 140 | - | - | |
Lja1g0754 | 263 | Gene3D | - | 138 | 231 | IPR014721 | - | |
Lja1g0754 | 263 | Gene3D | - | 41 | 137 | - | - | |
Lja1g0754 | 263 | PANTHER | 40S RIBOSOMAL PROTEIN S2-1-RELATED | 8 | 261 | - | - | |
Lja1g0754 | 263 | Pfam | Ribosomal protein S5, N-terminal domain | 84 | 139 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Lja1g0754 | 263 | ProSiteProfiles | S5 double stranded RNA-binding domain profile. | 84 | 138 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Lja1g0754 | 263 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Lja1g0754 | 263 | Pfam | Ribosomal protein S5, C-terminal domain | 159 | 231 | IPR005324 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g0754 | Lja-Chr1 | 7328992 | 7330162 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g0754 | 38 | 249 | Cytoplasmic Ribosomal Protein Gene Family | AT3G57490 | 86.425 | 1.58e-139 | 392 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g0754 | K02981 | - | gmx:100797105 | 444.121 |