Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0754 ATGGCGGAACGCGGTGGAGGCGAACGCGGCGGAGGCGATCGCGGTGGCTTCGGACGAGGCTTCGGTGGCCGAGGACGCGGAGGCCGTAGAAGAGGCGCAGGCCGCCGCGATGAGGAGGAGAAGTGGGTTCCAGTGACGAAACTCGGTCGTCTAGTGAGGGATGGGAAAATCCGCAGCTTGGAGCAGATCTACCTTCACTCTCTCCCCATCAAGGAGCACCAGATCATCGACACCCTCGTGGGACCCACGCTCAAGGACGAGGTGATGAAGATCATGCCAGTCCAGAAGCAGACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCTTTCGTCGTCGTCGGCGTGAAGTGCAGCAAGGAAGTCGCCACCGCCATCCGCGGCGGAATCATATTGGCGAAGCTTTCTGTGATCCCCGTCAGGAGGGGGTACTGGGGGAACAAGATTGGGAAGCCCCACACTGTTCCGTGCAAGGTGACAGGGAAGTGTGGTTCCGTAACTGTCAGAATGGTTCCAGCGCCTCGTGGTTCGGGAATCGTGGCTGCTAGGGTTCCAAAGAAGGTGTTGCAGTTCGCTGGGATTGATGATGTCTTCACTTCTTCCAGAGGATCCACCAAGACACTCGGCAATTTCGTCAAGGCAACTTTTGACTGTTTGCTGAAAACCTACAGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACACAGATCTGTTGGCTAAGCCAACTGCAAAGGCTCTAATCTTGGAGGAGGAAAGGGTGGATGCTTGA 792 0.5669 MAERGGGERGGGDRGGFGRGFGGRGRGGRRRGAGRRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYSFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0754 263 TIGRFAM uS5_euk_arch: ribosomal protein uS5 37 235 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lja1g0754 263 SUPERFAMILY Ribosomal protein S5 domain 2-like 151 231 IPR020568 -
Lja1g0754 263 PANTHER RIBOSOMAL S SUBUNIT 8 261 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g0754 263 SUPERFAMILY dsRNA-binding domain-like 80 140 - -
Lja1g0754 263 Gene3D - 138 231 IPR014721 -
Lja1g0754 263 Gene3D - 41 137 - -
Lja1g0754 263 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 8 261 - -
Lja1g0754 263 Pfam Ribosomal protein S5, N-terminal domain 84 139 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g0754 263 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 138 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja1g0754 263 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g0754 263 Pfam Ribosomal protein S5, C-terminal domain 159 231 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0754 Lja-Chr1 7328992 7330162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0754 38 249 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 86.425 1.58e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0754 K02981 - gmx:100797105 444.121