Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0747 ATGGCGAATATGGACGACAAGATCGACGCCGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGGCATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGTTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGCAAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCAAGGAGGATGATTTGAAGTTTTTTGCCAACATCATGCGGCATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGGGCTAGTCCAAATAACTCTCCAGCACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGGGATGGGTAATTATAAACCTCAGAAAAAATAAAAAAGCGATGAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGTAGACTATAGAACAGAGGTTACTGGTGTCTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGAAAAAGATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGTGCTGAAGCTAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGACGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTTTCAGAAAGTGATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTCACAACAGAAGTGAAGCCATCCAGGAAAGGTCAAAGAGCGAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGGCATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAGCCAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCAATCTAAGAGAGCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAGACGGTTCCTCAAATTGAAGAGGATGCCCTGATAGGCTCTACTAAGGGTGACACTTGCACCCACTTGAAAGAGATTGAAGCACTGAATGAACAATTGAAGCAAAAAGATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTCCTTGAAAAAGCGAACAGACAAAACAAGGAACAAATTTGCTGTTCTCCAGGAGGATTGA 1578 0.4106 MANMDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSKEDDLKFFANIMRHHSNQYSVEKLKDKSHDSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAVNASKKAKTVPQIEEDALIGSTKGDTCTHLKEIEALNEQLKQKDLEIESLREQLRKRDFEVSKLHIMISSLKKRTDKTRNKFAVLQED* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0747 525 Gene3D - 140 316 IPR036397 GO:0003676
Lja1g0747 525 Coils Coil 470 494 - -
Lja1g0747 525 SUPERFAMILY Ribonuclease H-like 145 301 IPR012337 -
Lja1g0747 525 Pfam Exonuclease 146 295 IPR013520 -
Lja1g0747 525 Coils Coil 201 221 - -
Lja1g0747 525 SMART exoiiiendus 144 305 IPR013520 -
Lja1g0747 525 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 432 - -
Lja1g0747 525 CDD REX1_like 146 297 IPR034922 -
Lja1g0747 525 PANTHER SMALL RNA DEGRADING NUCLEASE 2 14 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0747 Lja-Chr1 7250967 7256678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0747 121 276 C2H2 Transcription Factor Family AT3G27970 33.702 7.50e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0747 K14570 - gmx:100785565 758.059