Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0744 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGAAGATGACAAGATTGTCCACCTTTCAATGGCATGTCTGGGCGATGTCAGTAAGGATAAAGGGAGTGAAGCTGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGCTTGCACTCGGAACACTCTCTGCTGATAAGTACCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATAACTGGAAACATGGCAGTGTCTTCTTTACTGGATTTAAAGCTGAATCTCAGGCTGTATCTGATGGTGACGATGAAGATTCTGATGATTCTGATGGTGAAGATATCCCAATTAGTGTTTCCAATGGGAAACCTGAGATTGAGGTGAAGAATAGTGCCAAGCCTAATGCAAATGAGGCTAAACAAAAGGAGAAGATAACAGATCTGAAAAAGAATGAGAACAATAAGGGAAAAGCTGCAATTGCTGAAGATGAAGAAGATTCTTCTGGATCTGACACTGATAATACTAGTGAAGATGAGCCAATGCCAAATGGTGGGGTAGATAGTAGTGAAGATGATGATGATAGCGATGACGACGATGATGAAGACGATGATGAGGATGAGGTTGATGACGACGATGATGAGGAGACACCCAAGAAGGCTGAAGGGAGCAAGAAGCGGGTCCTTGATTCTCCTAAGAACACCCCTGTTCCTGTGAAGAAAGCGAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGCCCATGTTGCAACTCCTTACCCTAAGCAGGCTGGTAAGGCATCTGCAAGCACTAAGCAGCCAGCGAAGCCGCAGACTCCAAAGTCAGGTGGAGAATACAGCTGCAAGCCTTGTAACAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCACAACAAGGCCAAGCACAGTGCAGCTAAGTGA 948 0.443 MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAESQAVSDGDDEDSDDSDGEDIPISVSNGKPEIEVKNSAKPNANEAKQKEKITDLKKNENNKGKAAIAEDEEDSSGSDTDNTSEDEPMPNGGVDSSEDDDDSDDDDDEDDDEDEVDDDDDEETPKKAEGSKKRVLDSPKNTPVPVKKAKFVTPQKTDSKNVAHVATPYPKQAGKASASTKQPAKPQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAAK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0744 315 Gene3D Nucleoplasmin core domain 1 100 - -
Lja1g0744 315 MobiDBLite consensus disorder prediction 185 217 - -
Lja1g0744 315 ProSitePatterns Zinc finger C2H2 type domain signature. 290 311 IPR013087 -
Lja1g0744 315 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 310 - -
Lja1g0744 315 MobiDBLite consensus disorder prediction 99 315 - -
Lja1g0744 315 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Lja1g0744 315 MobiDBLite consensus disorder prediction 266 282 - -
Lja1g0744 315 MobiDBLite consensus disorder prediction 137 165 - -
Lja1g0744 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 315 IPR013087 -
Lja1g0744 315 Pfam C2H2-type zinc finger 288 312 - -
Lja1g0744 315 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0744 Lja-Chr1 7222771 7226922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0744 1 110 C2H2 Transcription Factor Family AT5G03740 49.091 4.10e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0744 NPL 8.1e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0744 - - lang:109334297 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0744 1 7222771 7226922 Lja1g0744 1 7222771 7226922 ECH