Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g0744 | ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGAAGATGACAAGATTGTCCACCTTTCAATGGCATGTCTGGGCGATGTCAGTAAGGATAAAGGGAGTGAAGCTGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGCTTGCACTCGGAACACTCTCTGCTGATAAGTACCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATAACTGGAAACATGGCAGTGTCTTCTTTACTGGATTTAAAGCTGAATCTCAGGCTGTATCTGATGGTGACGATGAAGATTCTGATGATTCTGATGGTGAAGATATCCCAATTAGTGTTTCCAATGGGAAACCTGAGATTGAGGTGAAGAATAGTGCCAAGCCTAATGCAAATGAGGCTAAACAAAAGGAGAAGATAACAGATCTGAAAAAGAATGAGAACAATAAGGGAAAAGCTGCAATTGCTGAAGATGAAGAAGATTCTTCTGGATCTGACACTGATAATACTAGTGAAGATGAGCCAATGCCAAATGGTGGGGTAGATAGTAGTGAAGATGATGATGATAGCGATGACGACGATGATGAAGACGATGATGAGGATGAGGTTGATGACGACGATGATGAGGAGACACCCAAGAAGGCTGAAGGGAGCAAGAAGCGGGTCCTTGATTCTCCTAAGAACACCCCTGTTCCTGTGAAGAAAGCGAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGCCCATGTTGCAACTCCTTACCCTAAGCAGGCTGGTAAGGCATCTGCAAGCACTAAGCAGCCAGCGAAGCCGCAGACTCCAAAGTCAGGTGGAGAATACAGCTGCAAGCCTTGTAACAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCACAACAAGGCCAAGCACAGTGCAGCTAAGTGA | 948 | 0.443 | MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAESQAVSDGDDEDSDDSDGEDIPISVSNGKPEIEVKNSAKPNANEAKQKEKITDLKKNENNKGKAAIAEDEEDSSGSDTDNTSEDEPMPNGGVDSSEDDDDSDDDDDEDDDEDEVDDDDDEETPKKAEGSKKRVLDSPKNTPVPVKKAKFVTPQKTDSKNVAHVATPYPKQAGKASASTKQPAKPQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAAK* | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g0744 | 315 | Gene3D | Nucleoplasmin core domain | 1 | 100 | - | - | |
Lja1g0744 | 315 | MobiDBLite | consensus disorder prediction | 185 | 217 | - | - | |
Lja1g0744 | 315 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 290 | 311 | IPR013087 | - | |
Lja1g0744 | 315 | PANTHER | HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 | 1 | 310 | - | - | |
Lja1g0744 | 315 | MobiDBLite | consensus disorder prediction | 99 | 315 | - | - | |
Lja1g0744 | 315 | Pfam | Nucleoplasmin-like domain | 3 | 93 | IPR041232 | - | |
Lja1g0744 | 315 | MobiDBLite | consensus disorder prediction | 266 | 282 | - | - | |
Lja1g0744 | 315 | MobiDBLite | consensus disorder prediction | 137 | 165 | - | - | |
Lja1g0744 | 315 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 288 | 315 | IPR013087 | - | |
Lja1g0744 | 315 | Pfam | C2H2-type zinc finger | 288 | 312 | - | - | |
Lja1g0744 | 315 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 1 | 310 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g0744 | Lja-Chr1 | 7222771 | 7226922 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g0744 | 1 | 110 | C2H2 Transcription Factor Family | AT5G03740 | 49.091 | 4.10e-32 | 119 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lja1g0744 | NPL | 8.1e-11 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g0744 | - | - | lang:109334297 | 365.54 |