LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0742	ATGGAAATGCCCGCACGAAGATCCAACTACTCACTCGTCAGTCAAATTCCCGACGACCACTTCGCCGGTACGCCACCACTCATCGATTCTTCCTCCGGCGACGGCAAAACCAAGTTCGACAGGGCCGCCTTTGACTGGGACTCCCTCTCCGATCACAGGCGGATCGGGAACATCTTCCCCTCGCTCGGCCTTCAGCGCCACTCCAGCGGGAGTAGTTTCGGCGAGAGCTCTCTCTCCGGCGAGTTTTACGCTCCGACGCTTTCAACCGCTGCTGCCAGCGAGATCGACGCGTTTGCCTACGCGCACGATGGTGCTGTTGGTGGGAGTGAGGTCAGAGCCAAGTTTCTGGCGAGGATCGGTGGGTCCTATGGTAGGAGCTGGGCGCAGCAGACGGAGGAGAGTTACCAGTTGCAGCTGGCTTTAGCGCTTCGGCTTTCGTCGGAGGCTACGCGTGCCGGTGATCCCAATTTTCTTGATCCTGGTCCGGATGAATCCGCTTTGAGGTCATCGCCGTTGTGCACGGCTGAGGCAGTGTCGCATAGGTTCTGGGTCAACGGCTGCCTATTATACTTCGACAAAATTCCTGATGGCTTTTATGTAATTCATGGGATGGATCCCTATGTATGGACCGTGTGCGCTGATGTGCAGGAAAGTGGCCGAATTCCATCAATTGAGACACTAAAATCAATAAATCCCTCTTATGGTTCTTCAGTTGAAGTAGTTTTGGTGGACAGACATAGTGATTCAAGCTTAAAAGACCTCCAAAATAGGGTACATAACATTTCTTTTACCTGCAGAACCGCCGAAGAAGTTGTAGAACATCTTGCCAAGCTGGTTTGCAATTACATGGGGGGTTCAGCTTCTGTTGGGGAAGATGGCATTTTTCCCATATGGAGAGAGTGCATTAATGATCTCAAAGATTGCTTAGGATCTGTTGCAGTCCCAATCGGCAGTCTATCTATTGGACTATGCAGTCATCGTGCTATACTATTCAAAGTACTAGCTGATACCATTGATCTACCATGTCGAATTGCGAAGGGTTGTAAATATTGCTCAAGAGACGATGCCTCCTCATGTCTTGTTCGATTTGGGCTTGACAAGGAATATATGGTTGATCTAGTTGGGAAGCCGGGTTGCTTATGTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAAGAATTAAGCCCGTTGGACCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCAGATTGTCTGTCTCTTGAGCTTGTCTTTGATACTGCTTCTGCAGAACAATATGATGGGAAGTGCAGGGACAGGACCCCTGGGCCAATTCCAAATAATAGTGGCAGAAGTTCACTGCATCCACAAGATAATCATTCAAGCCCACATGATCAAGGCGCTGAAACATTTAAATCAGGGGGCCTTCCTCAGAACATCGTTGAACAGACAACTGTGGGCAAGGATCTCTTGCCTCTAAAGCATAACCGTCCTGTTCATAGAGATATTAAAATCCCATTAGCGCAAACAAATATCCATGTGGATATTATTGGGGGTGGAAGGTATATTGAAGGAAGTCAACTGATTCCTAGCATACCTATTAGAGAGTTTACCTTTGATATGGAAGATCTGGACATACCTTGGAGTGATCTTGTGTTAAAAGAAAGAATAGGATCAGGTTCTTTTGGAACTGTACATCATGCTGACTGGAATGGCTCGGAGGTTGCTGTGAAAATTCTGATGGAGCAAGACCTTTTTGCTGAACGCTTCAATGAATTCTTGAGGGAGGTTGCAATAATGAAATGCTTGCGGCATCCAAACATTGTTTTATTCATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACAGAATATTTGTCAAGGGGTAGCTTATATAGGCTGTTGCATAAACCTGGCGCAAAAGAGATGTTGGATGAGAGGCGTAGGCTTAACATGGCTTTTGATGTGGCTAAAGGGATGAATTATCTTCATAAACATAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATTTACTGTCAAGGTTTGTGATTTTGGGCTTTCTCGACTAAAAGCAAATACATTTCTCTCATCCAAGTCAGCTGCTGGAACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGCGATGAGCCATCCAATGAGAAGTCAGATGTCTACAGCTTTGGCGTTATCTTGTGGGAGATTGCGACATTGAAACAGCCATGGGGTAATTTGAATCCAGCTCAGGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTCGATATACCTCATGATTTGAATCCCCAATTAGCCTCAATAATTGAGGTCTGCTGGGCCGACGAGCCTTGGAAACGCCCTTCTTTTTCAAGTATTATGGATACTTTGAAAGAATTGCTCAAACCCCCAATACCTCAACATAGTCATCCAAGCACGCTATTACTTAACTGA	2496	0.4619	MEMPARRSNYSLVSQIPDDHFAGTPPLIDSSSGDGKTKFDRAAFDWDSLSDHRRIGNIFPSLGLQRHSSGSSFGESSLSGEFYAPTLSTAAASEIDAFAYAHDGAVGGSEVRAKFLARIGGSYGRSWAQQTEESYQLQLALALRLSSEATRAGDPNFLDPGPDESALRSSPLCTAEAVSHRFWVNGCLLYFDKIPDGFYVIHGMDPYVWTVCADVQESGRIPSIETLKSINPSYGSSVEVVLVDRHSDSSLKDLQNRVHNISFTCRTAEEVVEHLAKLVCNYMGGSASVGEDGIFPIWRECINDLKDCLGSVAVPIGSLSIGLCSHRAILFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDKEYMVDLVGKPGCLCEPDSLLNGPSSISFSSPLRFPRIKPVGPTIDFRSLAKQYFSDCLSLELVFDTASAEQYDGKCRDRTPGPIPNNSGRSSLHPQDNHSSPHDQGAETFKSGGLPQNIVEQTTVGKDLLPLKHNRPVHRDIKIPLAQTNIHVDIIGGGRYIEGSQLIPSIPIREFTFDMEDLDIPWSDLVLKERIGSGSFGTVHHADWNGSEVAVKILMEQDLFAERFNEFLREVAIMKCLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGAKEMLDERRRLNMAFDVAKGMNYLHKHNPPIVHRDLKSPNLLVDKKFTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLKQPWGNLNPAQVVAAVGFKGKRLDIPHDLNPQLASIIEVCWADEPWKRPSFSSIMDTLKELLKPPIPQHSHPSTLLLN*	832

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja1g0742	831	MobiDBLite	consensus disorder prediction	451	483	-	-
Lja1g0742	831	SUPERFAMILY	Protein kinase-like (PK-like)	534	811	IPR011009	-
Lja1g0742	831	MobiDBLite	consensus disorder prediction	441	483	-	-
Lja1g0742	831	ProSiteProfiles	Protein kinase domain profile.	557	815	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lja1g0742	831	PANTHER	MAP KINASE KINASE KINASE-LIKE PROTEIN	115	822	-	-
Lja1g0742	831	Pfam	Protein tyrosine and serine/threonine kinase	558	811	IPR001245	GO:0004672\|GO:0006468
Lja1g0742	831	ProSitePatterns	Protein kinases ATP-binding region signature.	563	584	IPR017441	GO:0005524
Lja1g0742	831	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	678	690	IPR008271	GO:0004672\|GO:0006468
Lja1g0742	831	Gene3D	Phosphorylase Kinase; domain 1	550	635	-	-
Lja1g0742	831	SMART	serkin_6	557	819	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0742	Lja-Chr1	7181321	7200033	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g0742	1	820	MAP Kinase Kinase Kinase	AT5G03730	63.084	0.0	953

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Lja1g0742		PK_Tyr_Ser-Thr	3.4e-69	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0742	K14510		-	gmx:100775768	1215.68

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g0742	1	7181321	7200033	Lja1g0742	1	7181321	7200033	ECH
	Lja1g0742	1	7181321	7200033	Lja5g2533	5	49802657	49813588	PCT

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