Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0741 ATGGACAACACGCGTAGATCTTTCGATCGATCCAGACTTCCGGCCGCCAAGAAACCCAGGTTAACCGGAGATCCCAACGGCGGTTCGAAGTTTCCTCACCGGCAAACGGGATCATCATCTGCGTTTAATGGCCGACACCCTGATGGCGGCGGCGGCGGTGACGACGGCGAGTACCACCCTCAGCCGCTGCCGCATCAAGAGCTTGTGGCTCAGTATAAGACTGCTCTGGGTGATCTCACTTCTAACCATAAGCTGATAATTACTAATTTGACTATAATTGCTGAAGAGAATTTACCTGCTGCGAAGTCAATTGCTGGGACTATTTGTGATCACATTCTAGAGGTTCCAATAGAACAGAAGCTACCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGGCGGGATTATAAAAGATACTTCACTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCCAGTCTAATATGAGACGTCTTTTTAGAACTTGGAATGAAGTCTTTCCTCTTCAGACCCTTCTGATAATTGAGAAGGAACTTGGCTTCACTCGTAGCATCCATGTGAATCCCGAGTATTTCGAAAGGCAGCATCTACAGCAATCCAGCACGACTAAAGGAGGAGTTAATGATATGGCTGGAGCTCTTTACTCAAATGAGGAGTCAGAGAGGCCAGATAGAGCTTTAGCTGCCAGACGGCCATGGCGGGATCCTAGGGTTAATATGCATAATAATCAGCTAGTGCATAGAGATGCATTTAATGACTCTGATCCTGAAAGGAGTATTGGTGGATCCTTTGGAGGCAATGAATATAGTTCAGGTATTTCAAGTAAGTCAGGCTCAGGGGTCGGAAGAAATGAAAATAGGCTCATTGGTGGTGTTGCAGAGACATTATCTAGTCAAAGAAATGGATTCAGTCTAAAGCATAGTTTATCGAATCATGAAGCACCGAAGTCCATGAACAAAGATGCACATCATCAGTCAACACAAGCGATAACTGACTTACGTAGCAATGTGATGTCTGGTAACTGGAAAGATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATAAAGGACGCAATGTCTCTAGCAACTTGAGGGCAGACCCCTGGATGGCTGATGATGAAAATCTGAAAGGTGAAGATCACCTATTCACATCCAAATCACACCCTTTTGGGGAAAAGGTTGATAGAGAAATATCTACTGGTAAGAAACAACTACCTGCATTTGGGGGCCAGTCATCATTATCATGGCAATTGCAGAAGCCGCACTCAAGGGATAAGTTGAATCTGAAGCCAGGTCACTCTGAAGGATCTGTTTCCACCCTTGGTGGCTTACCTGGAAATATAAATTCGTCAGCTGTAAAGATGAGGAATCGGTCTTTTATGCCGAATGCAACGACAGGAGTGGCCAAAAGTATGGGACATCCGCAATTTGATTCTGGGGGAGCTGAATCTCCTTCCGGACAGTCACCTTTGAGAACCCAGTCTCCATCACTGTCTGTAAGCACACACCTCCCTCATTCAGTGCGAAATTTGGCTGAGCAAGATTATCCTCCGATTCCTAAAACATCTCAATTTTTGGGAAGCCAATATAATCCCTCCCCTGCCCTTCCTCACAATGTTAAGGTTGGTAACTTGCGAAAATCACAGGACCAGGACATGCATGGTCCACTATCTTCTGTAACTCCTCGCACTGATGTTACTCTTAAAACTAAGAAGGCACCCCAATCTAAAGTTTCTTTAGCCAGTGAAACGTCAGCGAAGTCAACCACAAATAGTCTTTCAGCTGCATCTGTGAAGACTGGAATCATCCCCAACAAATCAACTGCCAGTAGTCTTCCTGCTACAAGTTGTCTGGATGGAAGGAGTCTTCCATCTCAATCAGTGGTTCGGCCTGCTAGGTCAGGTGGTCCTTCCCCTACCACATCAATACCTCAAAGAAAGGCTGGTCAACCACAAAGGGGTTCTACTCAACCAGTTTCCTCTAATGTGAACAATGCCTCAGTTTTGAGCTCAAATACCACCAATAAGAATGCCTTGAATCCAATTGAAAACCTTTTAAACTCATTAGTCGCAAAAGGTTTGATATCAGCAAAAACAAAGTCAGCAACTATAGTACCAAGTGACCTGTTGGTGCGATCAGAGGACCAAACTGAAAACATTGCCACCAGTAGTTCTTTGCTAGTTCCTTCAGTTACAAGTTCTGCAGTTGTCCCGGAACTATCTTCCAGAGATGATGTAGATGATGCTGCAAAAGCATCTCAATCAACTAGCGTAGAAGTTAAAGATCTTATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTGATCAGGGAATTATTGGATGATCTCCCGCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGCAAGAACAGTTTAATAGACATTTGGAGTGGCATGCCACAAGAGAGAAAGAACAAAATGGTCTAATTTTGGCATCAAGAAGATGGTATGCAAACTCAAATGACTGGATTGCTTGCAAGTCTGAATATCAATCAGAGAATGAGTCTACTGATTCTGTAGATGTACATGACAAAAAGACCGACGGTAGTCAATGGGATACTATGGTTCTAGCAGATGAAAACCAGTGCTTGTGCGTATTTTGTGGCGAGCTATTTGAAGATGTGTACTGTCAGGAAAAGGACCAGTGGATGTTCAAAGGGGGTGTTTACCTGAACAATTCAGATAGCAAACTTGAGATGAAAAGTAGAAACGTAGGCCCCATTGTTCACGCAAGATGTTTATCAGAGAACCCAATGTCCAATATCACCAATACAGAGCATGATTAA 2871 0.4378 MDNTRRSFDRSRLPAAKKPRLTGDPNGGSKFPHRQTGSSSAFNGRHPDGGGGGDDGEYHPQPLPHQELVAQYKTALGDLTSNHKLIITNLTIIAEENLPAAKSIAGTICDHILEVPIEQKLPSLYLLDSIVKNIGRDYKRYFTARLPEVFCKAYRQVDPSVQSNMRRLFRTWNEVFPLQTLLIIEKELGFTRSIHVNPEYFERQHLQQSSTTKGGVNDMAGALYSNEESERPDRALAARRPWRDPRVNMHNNQLVHRDAFNDSDPERSIGGSFGGNEYSSGISSKSGSGVGRNENRLIGGVAETLSSQRNGFSLKHSLSNHEAPKSMNKDAHHQSTQAITDLRSNVMSGNWKDSEEEEFMWDEMNSGLTDKGRNVSSNLRADPWMADDENLKGEDHLFTSKSHPFGEKVDREISTGKKQLPAFGGQSSLSWQLQKPHSRDKLNLKPGHSEGSVSTLGGLPGNINSSAVKMRNRSFMPNATTGVAKSMGHPQFDSGGAESPSGQSPLRTQSPSLSVSTHLPHSVRNLAEQDYPPIPKTSQFLGSQYNPSPALPHNVKVGNLRKSQDQDMHGPLSSVTPRTDVTLKTKKAPQSKVSLASETSAKSTTNSLSAASVKTGIIPNKSTASSLPATSCLDGRSLPSQSVVRPARSGGPSPTTSIPQRKAGQPQRGSTQPVSSNVNNASVLSSNTTNKNALNPIENLLNSLVAKGLISAKTKSATIVPSDLLVRSEDQTENIATSSSLLVPSVTSSAVVPELSSRDDVDDAAKASQSTSVEVKDLIGFDFKPDVIREMHPHVIRELLDDLPHHCRICGVRLKQQEQFNRHLEWHATREKEQNGLILASRRWYANSNDWIACKSEYQSENESTDSVDVHDKKTDGSQWDTMVLADENQCLCVFCGELFEDVYCQEKDQWMFKGGVYLNNSDSKLEMKSRNVGPIVHARCLSENPMSNITNTEHD* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0741 956 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 193 - -
Lja1g0741 956 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 192 953 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 496 523 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 1 62 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 29 43 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 420 437 - -
Lja1g0741 956 CDD CID_Pcf11 69 182 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 419 465 - -
Lja1g0741 956 Gene3D - 62 189 IPR008942 -
Lja1g0741 956 MobiDBLite consensus disorder prediction 566 689 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 273 291 - -
Lja1g0741 956 ProSiteProfiles CID domain profile. 64 192 IPR006569 -
Lja1g0741 956 Pfam CID domain 77 174 IPR006569 -
Lja1g0741 956 SUPERFAMILY ENTH/VHS domain 65 189 IPR008942 -
Lja1g0741 956 MobiDBLite consensus disorder prediction 260 294 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 479 689 - -
Lja1g0741 956 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 193 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lja1g0741 956 SMART 558neu5 67 189 IPR006569 -
Lja1g0741 956 MobiDBLite consensus disorder prediction 536 550 - -
Lja1g0741 956 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g0741 956 ProSitePatterns Zinc finger C2H2 type domain signature. 807 827 IPR013087 -
Lja1g0741 956 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 192 953 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0741 Lja-Chr1 7175409 7180830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0741 779 944 C2H2 Transcription Factor Family AT4G04885 35.294 6.92e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0741 CID 1.3e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0741 K14400 - gmx:100788958 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0741 1 7175409 7180830 Lja1g0741 1 7175409 7180830 ECH
Lja1g0741 1 7175409 7180830 Lja5g2528 5 49694974 49702363 PCT