Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0738 ATGGAAATGGATGATCATCAAAATCATCACCACCACCATCAACAGCAACAACAACAACAACAGTACTCTGATCTCAGGTACACTCATTTCCCCTCTATACCACCACAGCCCACGGCGGAGCTCTTCCCCGCCGGCCACCCGAATCTAACACCCGCCGCCGCCGCTGCAGCACACCATCACTATGAGATGATGATGTTTGGTCGTGATATAATGCCTCGTTGCCTTCATGACTTTGCCTCCACTGATTCTGCTGCTGTTGCTGCTGCCGCCGCCATCAACACTAACATGACCTCCGCCACTCCAGCCACCACCAACAGTGCTTCAACTCCGCCACTTAGTGGGTTGGAGGCTGAGGCTGCGGTTGACGCCTCCACTGGAAGATGGCCAAGACAGGAGACTCTTACTCTTCTTGAGATCAGATCTCGTTTAGACCCTAAATTCAAAGAGGCTAATCAAAAGGGTCCTCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTATACAAATATTACAAGAAGACAAAAGAAGGAAAAGCAGGAAGACAAGATGGGAAGCATTACAGATTCTTCCGGCAACTTGAAGCCTTATATGGTGAGAACAGTAACAACACAGCCTCACTTCCAGAAACCAATTTTGGCGGCACCACCGTCCGGTTCCAAACAAGCAACAACCACACCCTTTCTCAAACAAACCAAGACATGTTCCATTCTCATCAAAAGCACTGTGATAGCCTCAGCCTCACAAACTCCACTGACTTTGACTCCACATCATCAGAGGACAATGATGATCATAGCAATGTGGGACTCAAGGACAATGATTCCATGGAGAAGAGGAGAAAGAGGAGAAGCTGGAAGGTGAAGATAAAGGATTTCATTGACTCTCAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGAAAAACTCACTAATACACTGGAGCAGAAGGAGAAGGAGAGGGTTTTAAGAGAAGAAGAGTGGAGGAGGCAAGAAGGAGAAAGGTTGGAGACGGAGCACAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGCAAAAGCTAACAGGAAATGAAGTAGTTATAAAGACTCAATCTCATCATGAGGGTATAATGGGAACTGGCATAATTCAAAACCAGAATAATGAAGATGCTGAAAGCTGGCCAGAATCTGAGATCACAAGGCTTGGACAGTTGAAAACTGAGATGGAGGCAAGGATAAGGGAAAGTGGGTGTCCAGAAGAGGTTATGTGGGAGGAAATAGCTACCAAAATGGCTTGTTTTGGATATGAAAGGACTCCTTTGATGTTCAAGGAGAAATGGGAAAGTATGAGCAACTGTGCTAGGAATATTGCCAAGGACATTGGAAACAAGAAGAGGAAGGAAAACTCAAGAAGTTGTTTTTACTTTGATAATAACAATGATCACCAGTCTTCTCTATATAACCAAGGAGGTGCCTTTTGTGATGTCAATGATCAAAGGCAAGGGACTGGGAGGCTGCAAACAAATGATGGTTCTTCACCTTCTAATTCTAATGTTGGAAATGTTGTTGGGGCTGAGAGCTGCTTCCCCTTCTTGATGAGTGAGGGGGGAAATTTGTGGGAGAACTACAGCTTAAAGATGAACAAAGCAAACCAAAACTAA 1722 0.4518 MEMDDHQNHHHHHQQQQQQQQYSDLRYTHFPSIPPQPTAELFPAGHPNLTPAAAAAAHHHYEMMMFGRDIMPRCLHDFASTDSAAVAAAAAINTNMTSATPATTNSASTPPLSGLEAEAAVDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNNTASLPETNFGGTTVRFQTSNNHTLSQTNQDMFHSHQKHCDSLSLTNSTDFDSTSSEDNDDHSNVGLKDNDSMEKRRKRRSWKVKIKDFIDSQMRKLVEKQEEWLEKLTNTLEQKEKERVLREEEWRRQEGERLETEHKFWAKERAWIEARDAALMEALQKLTGNEVVIKTQSHHEGIMGTGIIQNQNNEDAESWPESEITRLGQLKTEMEARIRESGCPEEVMWEEIATKMACFGYERTPLMFKEKWESMSNCARNIAKDIGNKKRKENSRSCFYFDNNNDHQSSLYNQGGAFCDVNDQRQGTGRLQTNDGSSPSNSNVGNVVGAESCFPFLMSEGGNLWENYSLKMNKANQN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0738 573 MobiDBLite consensus disorder prediction 274 293 - -
Lja1g0738 573 MobiDBLite consensus disorder prediction 267 293 - -
Lja1g0738 573 MobiDBLite consensus disorder prediction 519 538 - -
Lja1g0738 573 Pfam Myb/SANT-like DNA-binding domain 413 498 IPR044822 -
Lja1g0738 573 Pfam Myb/SANT-like DNA-binding domain 127 213 IPR044822 -
Lja1g0738 573 Coils Coil 317 344 - -
Lja1g0738 573 ProSiteProfiles Myb-like domain profile. 120 185 IPR001005 -
Lja1g0738 573 Gene3D - 414 475 - -
Lja1g0738 573 Gene3D - 128 190 - -
Lja1g0738 573 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g0738 573 PANTHER - 27 565 - -
Lja1g0738 573 CDD GT1 127 192 - -
Lja1g0738 573 CDD GT1 414 472 - -
Lja1g0738 573 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 27 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0738 Lja-Chr1 7154014 7157216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0738 42 569 Trihelix Transcription Factor Family AT5G03680 44.366 6.67e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g0738 Myb_DNA-bind_4 5.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0738 - - gmx:100813245 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0738 1 7154014 7157216 Lja1g0738 1 7154014 7157216 ECH
Lja1g0738 1 7154014 7157216 Lja5g2522 5 49619792 49624288 PCT