Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0737 ATGCCTTCCAACAATGGTTGTGCATCAAGCAGTGGCAGCAGCAGCAAAGGCGGCGGCCTAAAGTACCGCGGAGTGAGGCGCCGCAGCAGTGGAAAATGGGTATCTGAAATCAGAGAACCAAAGAAACCAAACAGAATCTGGTTAGGGACATTTCCCACACCAGAAATGGCAGCTATTGCCTATGATGTTGCTGCCCTTGCTCTGAAGGGTAAGGATGCTGAACTCAACTTCCCTAACTCGGTTTCTTCTCTGCCTGTCCCTGCTTCTTCTTCCGCGCGTGATATTCAGATGGCGGCGGCTGGTGCTGCGGCTGCACTTGGAGCAGCCAAGGATGCACTCAAGGGCAGTGAGGGGAATAACAATGTCTCTGTGGAACAACAAGAGGTTGTTTCTGTGGGGAACAACAACAATGACAATTATGAGTTTGTGGATGAGGACTTGATCTTTGATATGCCAAATGTTTTGGTTAACATGGCTGAAGGAATGCTGCTAAGCCCTCCTCGTTTTGACTTTGCTAGTGCTGATGACTATGCTTCCTCAGAAAATTACATGGGGAGTGAAGATCCAAACCTCTGGAGTTATCCCTATTTTCCATAA 597 0.4841 MPSNNGCASSSGSSSKGGGLKYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSVSSLPVPASSSARDIQMAAAGAAAALGAAKDALKGSEGNNNVSVEQQEVVSVGNNNNDNYEFVDEDLIFDMPNVLVNMAEGMLLSPPRFDFASADDYASSENYMGSEDPNLWSYPYFP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0737 198 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lja1g0737 198 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g0737 198 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Lja1g0737 198 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lja1g0737 198 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Lja1g0737 198 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Lja1g0737 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 195 - -
Lja1g0737 198 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lja1g0737 198 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g0737 198 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lja1g0737 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 10 195 - -
Lja1g0737 198 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0737 Lja-Chr1 7113481 7114594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0737 12 195 AP2-EREBP Transcription Factor Family AT2G36450 60.733 9.53e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g0737 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0737 - - gmx:100799620 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0737 1 7113481 7114594 Lja1g0737 1 7113481 7114594 ECH
Lja1g0737 1 7113481 7114594 Lja5g2521 5 49596970 49597970 PCT