Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0732 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACAGCATTCTTCAAAGATGCCAAAACTTCTCCCTGAATCCCCATCAACTGCCTCTGCTCTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCAACTTGTCAGATTCATCAACATTTCCTTCTACTACTACCACTAACAGATTTCCCAGAATGGCAAGTTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGCTGGCTGGTACCTCTGTTCCTCCTGAGCTTCTTCAACCAATCAAGAAAAGCCTTCTCCATTCCCCTTCATTTTTCCTCCACCACCCACTCCAACATTATCAACCTACTTTGCTGCAGTCCGGGTATTGGGGAAGAGCTGCCATGGATCCGGAGCCTGGCCGTTGCCGGAGGACAGACGGCAAAAAGTGGCGGTGCTCGAGGGATGTGGTGGCCGGACAAAAGTACTGTGAACGCCACATGCACCGTGGAAAAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAACTAGTGCCGGTGGTGGTGCCGGTGTTGGTGGTGGATCTTTCTGTGCTTCATCCTCCACTTCTTCACCGCCTCTGGTCACTGCCTCTATGAAATCCCCTTTTGATCTCCTTCACCTTAATGAACGTTCCTCTGGGACCAAGAAAGAAGACAAGAGCTTGTTTGAAAGTCAAGATCATGTGAGTGGGGATGGTAGGTCAGGTGGGCATATGCTAAGGCATTTCTTTGATGATTGGCCAAGATCACTCCAAGACTCTGACAACAACAACGCTGAAAACAATACTGGGAGGGTGAACTCTTCCACATGCCTCTCCATTTCAATGCCAGGAAACACTTCTTCTTCAGATGTGTCATTAAAACTATCCACTGGCTATGGTGGATCAGAGGATCCGGGCACTAGAAGTGAGAATATGGGCATGGAAGCAGAGCAGGTGCAGTTGAATTGGGCCGGAGGATGGGCTTCTTCGGGTAATCATTCAATGGGAGGACCACTTGCAGAGGCACTGAGATCATCCACCTCAACTTCCTCACCCACTAGTGTTCTGCATCAGTTGCATCGTGGTTCTGGATCTGAGACCAGCTTCATTAGTTAG 1152 0.4896 MDFHLKQWRNQHESEEQQHSSKMPKLLPESPSTASALPLFVPEPNSKVSNLSDSSTFPSTTTTNRFPRMASYFSLSQWQELELQALIFRYMLAGTSVPPELLQPIKKSLLHSPSFFLHHPLQHYQPTLLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGKNRSRKPVELPTPTSAGGGAGVGGGSFCASSSTSSPPLVTASMKSPFDLLHLNERSSGTKKEDKSLFESQDHVSGDGRSGGHMLRHFFDDWPRSLQDSDNNNAENNTGRVNSSTCLSISMPGNTSSSDVSLKLSTGYGGSEDPGTRSENMGMEAEQVQLNWAGGWASSGNHSMGGPLAEALRSSTSTSSPTSVLHQLHRGSGSETSFIS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0732 383 MobiDBLite consensus disorder prediction 268 308 - -
Lja1g0732 383 MobiDBLite consensus disorder prediction 339 383 - -
Lja1g0732 383 Pfam WRC 141 183 IPR014977 -
Lja1g0732 383 MobiDBLite consensus disorder prediction 231 322 - -
Lja1g0732 383 MobiDBLite consensus disorder prediction 353 383 - -
Lja1g0732 383 MobiDBLite consensus disorder prediction 252 267 - -
Lja1g0732 383 PANTHER GROWTH-REGULATING FACTOR 3 8 383 - -
Lja1g0732 383 PANTHER - 8 383 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja1g0732 383 MobiDBLite consensus disorder prediction 231 245 - -
Lja1g0732 383 ProSiteProfiles QLQ domain profile. 72 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja1g0732 383 Pfam QLQ 73 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja1g0732 383 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g0732 383 ProSiteProfiles WRC domain profile. 140 184 IPR014977 -
Lja1g0732 383 SMART QLQ_2 71 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja1g0732 383 MobiDBLite consensus disorder prediction 1 34 - -
Lja1g0732 383 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0732 Lja-Chr1 7061310 7064649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0732 1 371 GRF Transcription Factor Family AT3G52910 49.745 6.01e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja1g0732 WRC 9.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0732 - - gmx:100814842 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0732 1 7061310 7064649 Lja1g0732 1 7061310 7064649 ECH