Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0724 ATGGGTTCGTTTTCTGGGACTTGTGAAATAGTTGAAACGAGGAAGGAGCGAAGCCCAGGGAAAGCTGTAGGGATTTATCCTTCCGATTCTCAGTTTAACAAGTCTGATAGAAATCTGCTGAAACTGGTATACAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTGCTCTTAAATCATCATCAAGGGATTTGGGCCTTTTCCAAGATGGTACAAGTCCTAAGATGAAAAATGCATCAAAAAAGCCAATCATAATGGGTGTTTCTCGGTCCCCAAAAGCTGGAACTTCTGAGCCTGTTAATTTGAAGCAGGCGTTAAGGGACCATTGCATATCTAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAGTCCTCAGCTTCTCCTAGAATATCAGAGGTTGGCAAGATACAGACATTGTACAATTCAGTTGTTGCTGAAACAGGTCAATCTGGGCCTTCTTATGTTGAGAGTAAGGGGTGTACAGTGGAAATTTCTCTTGTACCAGAAAAAAGCAAGTCACCCTCCATGGAGCAAACTTCTCATTCTCATCAAACTTTCCAAATCACATCATCAAGCCCAAGTACAGTTATAATTCAATCACAGTGCGTGGTACCTGTTCAAGCAGAAAAACTTACATCTGCATCTTCTCCATCTCTTTGTAATGCATTTGGAAGCAAATTAGAGTTGCCTGAAAATGCTCCTTCCCCTAAAAAGCTAGGAAATAAGGCCTCTGTTTCAAATACTGCACCGAAAAGTAGGTTGCAAACAGTATCTTCTTCATCTACTTCTGTAAGTGGAAGCAGAGTTAACAAACTGCCACGCCATGCTCCCCGAACAGTTAAAACGGTCACCAAGAACAAGAATCAGAGTAAGAAAAAAGTAAAGGAGGATTCAGGTTTTGCCTCGTGTGGTCCTACATCCAATGAAGTTAATAAGTCAGTTGGTACAGCTCAGCTGGTTTGTGAGAGATGTAGGTGTGCATTAGAAACTAGCCTAGAAACTAAAAGTGAAGGAAAAAGCCAAGATATCATGGCATTAGACTCTACCAGTCCTGTAAATGGAGTGAACTTGAATAGTGTGCACTCTGGTTCAAATAAGGCTGATTTGGCATCAACTAGCAGCAATAAAAGCAAAGCAGTCACAAAAGTGAAGAAGAACACCAAGTTGAAAGAGCAACTTGAATTTTCGCAAAGTTCAAAGAGTAGTCAAGGTGGGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGCTCAAGTTGCGGCACCAGGCCTCATATGTCGAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGTATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAACTAATTGGCACAAGTTGCTTGTTTGCTATAAAGGTCATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATACTAAGGATGCTGGATCATCCATTTCTTCCCACACTGTATGTGCAGTTTACATCAGATAATCTGTCATGTCTGGTCATGGAATTTTGTCCGGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTCGGTGTTTTTCAGAGCCAGCAGCTAGGTTTTATGTTGCTGAAGTCCTTCTTGCTTTGGAATACTTGCACATGCTTGGAATTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGTGAAGACGGACACATTATGCTCACAGATTTTGATCTGTCGTTGAGGTGTTCTGTTAGTCCCACGCTTCTGAAATCATCTTCTGATGTTGACCCTGCAAAAGTTTCTGGTCTTAGTGCTCAAGCAAGTTGCATTGAGCCATTCTGCATTCAACCATCTTGTCAAGTTTCATGCTTCAGCCCTAGATTCTTACCTGCAGCTGCAAAAGCAAGGAAAATAAAAGTTGATGCTGCTGCCCATGTCAGATCACTGCCACAGCTTGTGGCCGAGCCCACAGATGCAAGATCAAACTCATTTGTCGGTACACATGAATACTTGGCGCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTATATGGTAGAACACCATTCAAAGGTTCTAACAATGAAGAAACATTGGCAAACGTGGTGTTGCAAAGTCTTAGATTCCCTGACAACCCATTTGTTAGTTTTGAAGCGAGGGATCTGATTAGAGGGTTGTTGGCCAAAGAGCCTGAAAGCCGTTTGGGTTCTGAGAAAGGTGCTGCTGAGATTAAACAGCATCCCTTCTTTGAGGGCCTTAACTGGGCCTTAATTCGATGTGCTATTCCACCAGAACTTCCAGAGTTTTGTGACTTTGGAGTTTCAGACATGACCTCACAGGACAAGGGTGCCAAGTATTTAGAGTCTAAAGCAGGAGAGCATGTGGAATTCGAGTTGTTTTAA 2523 0.4205 MGSFSGTCEIVETRKERSPGKAVGIYPSDSQFNKSDRNLLKLVYKDNLDDDINKLFESIALKSSSRDLGLFQDGTSPKMKNASKKPIIMGVSRSPKAGTSEPVNLKQALRDHCISKASEMAAMKRLSKSSASPRISEVGKIQTLYNSVVAETGQSGPSYVESKGCTVEISLVPEKSKSPSMEQTSHSHQTFQITSSSPSTVIIQSQCVVPVQAEKLTSASSPSLCNAFGSKLELPENAPSPKKLGNKASVSNTAPKSRLQTVSSSSTSVSGSRVNKLPRHAPRTVKTVTKNKNQSKKKVKEDSGFASCGPTSNEVNKSVGTAQLVCERCRCALETSLETKSEGKSQDIMALDSTSPVNGVNLNSVHSGSNKADLASTSSNKSKAVTKVKKNTKLKEQLEFSQSSKSSQGGYSSSTSTSDESNVSGSSCGTRPHMSKDVRWEAIRHAQMQYGVLGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEFCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLTDFDLSLRCSVSPTLLKSSSDVDPAKVSGLSAQASCIEPFCIQPSCQVSCFSPRFLPAAAKARKIKVDAAAHVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLRFPDNPFVSFEARDLIRGLLAKEPESRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPEFCDFGVSDMTSQDKGAKYLESKAGEHVEFELF* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0724 840 Gene3D Transferase(Phosphotransferase) domain 1 538 606 - -
Lja1g0724 840 CDD STKc_phototropin_like 456 808 - -
Lja1g0724 840 PANTHER FLIPPASE KINASE 1-RELATED 1 840 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 279 293 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 397 431 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 359 385 - -
Lja1g0724 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Lja1g0724 840 Gene3D Phosphorylase Kinase; domain 1 456 537 - -
Lja1g0724 840 Gene3D Transferase(Phosphotransferase) domain 1 683 805 - -
Lja1g0724 840 SMART serkin_6 458 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0724 840 Pfam Protein kinase domain 459 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0724 840 Pfam Protein kinase domain 687 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0724 840 SUPERFAMILY Protein kinase-like (PK-like) 433 814 IPR011009 -
Lja1g0724 840 ProSiteProfiles Protein kinase domain profile. 458 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0724 840 MobiDBLite consensus disorder prediction 359 431 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 244 274 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g0724 840 MobiDBLite consensus disorder prediction 236 313 - -
Lja1g0724 840 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0724 Lja-Chr1 6956266 6960875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0724 1 840 AGC Kinase Gene Family AT3G52890 52.648 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja1g0724 Pkinase 3.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0724 - K08286 gmx:100792120 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0724 1 6956266 6960875 Lja1g0724 1 6956266 6960875 ECH
Lja1g0724 1 6956266 6960875 Lja5g2518 5 49473200 49478988 PCT