Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0723 ATGAAGGTGATCGCAGCCTACTTGCTCGCCGTGTTGGGAGGTAACACAGCCCCTTCTGCCGACGACTTGAAGAGCATCCTTAGCTCCGTTGGAGCTGATGCGGATGATGAGAAACTCAGTTTTCTCTTGTCTGAAGTGAAGGGTAAGGATCTCGCTGAGGTTATTGCCTCCGGTAGGGAGAAGTTATCCTCAGTTCCTTGCGGTGGTGGTGTTGCCGTTGCTGTGTCTGCTGCTCCGGGAGGTGGCGGTGGTGGTGCTGCTCCAGCTGCAGCTGAATCGAAGAAAGAGGAAAAGGTGGAGGAGAAGGAGGAATCAGATGATGACATGGGTTTCAGTCTCTTTGATTAG 348 0.5287 MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGREKLSSVPCGGGVAVAVSAAPGGGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0723 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Lja1g0723 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lja1g0723 115 Gene3D - 1 59 IPR038716 -
Lja1g0723 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 115 - -
Lja1g0723 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lja1g0723 115 MobiDBLite consensus disorder prediction 80 115 - -
Lja1g0723 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0723 Lja-Chr1 6947687 6948758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0723 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.348 1.57e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0723 K02943 - egt:105959066 126.716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0723 1 6947687 6948758 Lja1g0723 1 6947687 6948758 ECH