Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g0723 | ATGAAGGTGATCGCAGCCTACTTGCTCGCCGTGTTGGGAGGTAACACAGCCCCTTCTGCCGACGACTTGAAGAGCATCCTTAGCTCCGTTGGAGCTGATGCGGATGATGAGAAACTCAGTTTTCTCTTGTCTGAAGTGAAGGGTAAGGATCTCGCTGAGGTTATTGCCTCCGGTAGGGAGAAGTTATCCTCAGTTCCTTGCGGTGGTGGTGTTGCCGTTGCTGTGTCTGCTGCTCCGGGAGGTGGCGGTGGTGGTGCTGCTCCAGCTGCAGCTGAATCGAAGAAAGAGGAAAAGGTGGAGGAGAAGGAGGAATCAGATGATGACATGGGTTTCAGTCTCTTTGATTAG | 348 | 0.5287 | MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGREKLSSVPCGGGVAVAVSAAPGGGGGGAAPAAAESKKEEKVEEKEESDDDMGFSLFD* | 116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g0723 | 115 | Pfam | 60s Acidic ribosomal protein | 18 | 114 | - | - | |
| Lja1g0723 | 115 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER | 1 | 115 | IPR044076 | GO:0002182|GO:0003735|GO:0022625 | |
| Lja1g0723 | 115 | Gene3D | - | 1 | 59 | IPR038716 | - | |
| Lja1g0723 | 115 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P2-1 | 1 | 115 | - | - | |
| Lja1g0723 | 115 | Hamap | 50S ribosomal protein L12 [rpl12]. | 2 | 115 | IPR027534 | GO:0003735|GO:0005840|GO:0006414 | |
| Lja1g0723 | 115 | MobiDBLite | consensus disorder prediction | 80 | 115 | - | - | |
| Lja1g0723 | 115 | CDD | Ribosomal_P2 | 1 | 115 | IPR044076 | GO:0002182|GO:0003735|GO:0022625 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g0723 | Lja-Chr1 | 6947687 | 6948758 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g0723 | 1 | 115 | Cytoplasmic Ribosomal Protein Gene Family | AT3G44590 | 64.348 | 1.57e-31 | 106 |
Event-related genes