Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0715 ATGATGAATACTGATTTATCATTCCCCGTTTCCCTTTCTTATCTCTCTTCCATTCCAATCTCCACAACCAACCACTCCTTCTCTTCAATCAGATTTTCTACGAATCCAAACAAACGCACGCTTCAAATATTCTTCATCAGATCTTCTATGGCGGAAGAACACGGATGCAAAGCACCGAAAGGCCACATACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGTCCAGCCACCATGAATCTTTGCTCCAAATGCTACAGGGACGTCCATCTGAACGACCAAGACCAAGCCAAGACCAAATCCACCATCCAAACCGCTCTCTCCACCGTCGCAGCCTCCGCCGCCGCTTCCATGCCACCTGCCGTTGAATCCGTTCCTCAACCGCCAGCGCTCACTTCGCCGGAGATCGCGTCGCCGGCGGCTCAGGTAACGAACCGGTGCGGGACGTGCCGTAAACGCGTCGGTTTGACGGGGTTCAGGTGCAGATGCGAAGCCACGTTTTGCGGGGCCCACAGGTACCCGGAGAAGCACGGTTGCGGGTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATTGCACGGGCGAATCCTGTGGTCAGAGCTGATAAGCTGAGAAGGATTTAA 618 0.5405 MMNTDLSFPVSLSYLSSIPISTTNHSFSSIRFSTNPNKRTLQIFFIRSSMAEEHGCKAPKGHILCANNCGFFGSPATMNLCSKCYRDVHLNDQDQAKTKSTIQTALSTVAASAAASMPPAVESVPQPPALTSPEIASPAAQVTNRCGTCRKRVGLTGFRCRCEATFCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0715 205 Gene3D - 48 111 - -
Lja1g0715 205 Pfam AN1-like Zinc finger 146 182 IPR000058 GO:0008270
Lja1g0715 205 ProSiteProfiles Zinc finger A20-type profile. 59 93 IPR002653 GO:0003677|GO:0008270
Lja1g0715 205 PANTHER AN1-TYPE ZINC FINGER PROTEIN 50 205 - -
Lja1g0715 205 SMART AN1_Zf_4 146 183 IPR000058 GO:0008270
Lja1g0715 205 Pfam A20-like zinc finger 63 86 IPR002653 GO:0003677|GO:0008270
Lja1g0715 205 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 50 205 - -
Lja1g0715 205 SMART A20_3 62 86 IPR002653 GO:0003677|GO:0008270
Lja1g0715 205 ProSiteProfiles Zinc finger AN1-type profile. 140 186 IPR000058 GO:0008270
Lja1g0715 205 SUPERFAMILY AN1-like Zinc finger 138 200 IPR035896 -
Lja1g0715 205 Gene3D - 120 201 IPR035896 -
Lja1g0715 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 64 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0715 Lja-Chr1 6865353 6866481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0715 50 205 C2H2 Transcription Factor Family AT3G52800 50.588 5.84e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0715 - - gmx:100527251 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0715 1 6865353 6866481 Lja1g0715 1 6865353 6866481 ECH
Lja1g0715 1 6865353 6866481 Lja5g2498 5 49132643 49135298 PCT