Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0709 ATGGTGCTGCGTGAGGATCAGATGAACTCGCAAGGGGAGGTAGAGTCTGCTCTGCAGCAGATGGAACAAGAAGCCAACAAGAACAATCATCATCATCCAATTATATCATCATCGCTGGGAAGACAAACATCTATTTATTCCCTCACCCTCGACGAGTTCCAGCACAGCCTCTGCGAGGCCGGCAAGAATTTCGGCTCCATGAACATGGATGAGTTCCTCAGCAGCATCTGGAGTGCTGAAGAGAACCAACAGCATGCCTCTTCCAATCCTAACCAACACCACTTAAACAACATTAACAACAACACCATGTTACAGAGTTCCACTCACAATCACAGAGGAGGCAGCAATAGCATCACCAAGCAACCGAGCCTCCCTCGCCAAAATTCGCTCTCCATTCCCGCACCTCTCTGCAGGAAAACAGTGGATGAAGTTTGGTCTGAGATTCACAGAGAACAGCAGCAGCAGAAACAGAATCAAAACAACAACGACAACAACACTGTTCAGAACACTGACTCGGTTCCTCGCCAACCCACCTTTGGGGAGATGACTCTGGAGGATTTCTTGGTTAAAGCAGGGATAGTTCGGGAACCGTGTAATGCTAATGCACCAGCTGCTGCAACATCAGTGTCTCAGCAGCAGCAGCATTACGGGGTGTACCCGAATAACAACCCTGCAATGGCTACTAATTCTTTTGTTATTGGTGCTGGAGCTGGAGGAGTAGGGAATGTAGGGAATGTGGTTGCGCCACCTTATTCGGTGGCGGCTCAGGGAGGTGGTGCGGCGATTGGGGAGGCCTCTGGGTATGTGGCGAATGGTGCTAAGAGGGATAATGGTGGATACTCTGTGCCGCCGGCAGCAGGGGTTTGTTTTGGGGGGAGGGTGGGGGTGGTGAATGGAGGGGCTGGTTATGGGGTGGCGCCACCGAATATGGGGATGGTTGCTCCGGTGAGTCCGGGTTCTTCTGATGGGATGGGAACTGAAAACTCTGGGGGTCAATTTGGGCTTGACATGAGTGGTTTGAGAGGAAGGAAGAGGTTGGTTGATGGTCCTGTGGAGAAGGTTGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCAGCCAGATCTAGAGCCAGAAAACAGGCATACACAGTTGAATTAGAAGCTGAACTGAACATCTTAAGAGAAGAGAACAACCAACTGAAACAGGCCTTGGCTGAGCTTGAGAGGAGGAGAAGGCAACAGTGTTCAGAGGAAGTGAACGTGAGAGTTCAAAGCAAAGCGCAGAAGGCAAAAGAGAAACTGAGAGCGTTGAGAAGAAACATGAGTTGTTCTTTGTGA 1329 0.5026 MVLREDQMNSQGEVESALQQMEQEANKNNHHHPIISSSLGRQTSIYSLTLDEFQHSLCEAGKNFGSMNMDEFLSSIWSAEENQQHASSNPNQHHLNNINNNTMLQSSTHNHRGGSNSITKQPSLPRQNSLSIPAPLCRKTVDEVWSEIHREQQQQKQNQNNNDNNTVQNTDSVPRQPTFGEMTLEDFLVKAGIVREPCNANAPAAATSVSQQQQHYGVYPNNNPAMATNSFVIGAGAGGVGNVGNVVAPPYSVAAQGGGAAIGEASGYVANGAKRDNGGYSVPPAAGVCFGGRVGVVNGGAGYGVAPPNMGMVAPVSPGSSDGMGTENSGGQFGLDMSGLRGRKRLVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNILREENNQLKQALAELERRRRQQCSEEVNVRVQSKAQKAKEKLRALRRNMSCSL* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0709 442 MobiDBLite consensus disorder prediction 1 35 - -
Lja1g0709 442 CDD bZIP_plant_BZIP46 357 411 - -
Lja1g0709 442 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 360 375 IPR004827 GO:0003700|GO:0006355
Lja1g0709 442 Pfam bZIP transcription factor 357 407 IPR004827 GO:0003700|GO:0006355
Lja1g0709 442 SUPERFAMILY Leucine zipper domain 357 407 IPR046347 GO:0003700|GO:0006355
Lja1g0709 442 Coils Coil 380 414 - -
Lja1g0709 442 MobiDBLite consensus disorder prediction 151 177 - -
Lja1g0709 442 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 355 407 IPR004827 GO:0003700|GO:0006355
Lja1g0709 442 SMART brlzneu 353 417 IPR004827 GO:0003700|GO:0006355
Lja1g0709 442 Coils Coil 417 437 - -
Lja1g0709 442 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 441 IPR043452 GO:0003700|GO:0045893
Lja1g0709 442 MobiDBLite consensus disorder prediction 80 134 - -
Lja1g0709 442 MobiDBLite consensus disorder prediction 9 35 - -
Lja1g0709 442 MobiDBLite consensus disorder prediction 148 178 - -
Lja1g0709 442 MobiDBLite consensus disorder prediction 80 135 - -
Lja1g0709 442 Gene3D - 355 411 - -
Lja1g0709 442 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 4 441 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0709 Lja-Chr1 6801570 6804911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0709 1 416 bZIP Transcription Factor Family AT2G36270 48.268 3.57e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g0709 bZIP_1 1.9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0709 K14432 - gmx:100790948 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0709 1 6801570 6804911 Lja1g0709 1 6801570 6804911 ECH
Lja1g0709 1 6801570 6804911 Lja5g2490 5 48862048 48867108 PCT