Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0705 ATGGAGAGGTTGGAGTTGAAGGAGGTTCAGAGGCTGGAAGGTCACAACGACAGGGTTTGGAGCTTGGATTGGAACCCGGCAACTGGTCATGCTGGTACTCCTCTCGTCTTCGCTTCTTGCAGCGGCGACAAAACTGTCCGAATCTGGGAACAAGACCTCTCCTCTGGCCTCTGGGCCTGCAAGGCGGTTTTGGACGAAACACACACTCGAACCGTTCGATCTTGTGCTTGGTCACCTTCTGGGAAACTGTTAGCCACTGCAAGCTTTGATGCCACCACTGCCATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTTGCTACTTTGGAGGGTCATGAAAATGAAGTGAAGAGTGTATCTTGGAATGCATCTGGAACCTTGCTTGCAACTTGTAGTAGGGATAAATCTGTCTGGATATGGGAAATGCAGCCGGTCAACGAGTTTGAGTGTGTGTCCGTGCTGCAAGGACATACCCAGGATGTTAAAATGGTCAAGTGGCACCCCACGGAGGATATCTTAATTTCATGTAGCTATGATAATAGTATTAAGGTTTGGGCAGATGAAGGTGACAGTGACGATTGGCAGTGTGTTCAAACTCTCGGTCAACCTAATAATGGTCATACTTCTACTGTTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCGTGAAGGTATGGGAAACAGAAAACGTACAATCTAGTAGTGGATTTGCACCTTGGAGACATCTTTGCACTCTTTCAGGATATCATGATCGGACGATTTTCTCAATTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCTGCTGATGACACTATACAGCTTTTTGGGGATGACAATGAAAGTCAGGTCGGAGGTCCTCTGTACACGTTGCTGCTGAAAAAGGAGAAGGCCCATGACATGGATATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAACCACTACTAGCCTCTGCCAGCGATGATGGGACAATCAAGGTGTGGGAGCTGGTATCCCAATGA 1032 0.4758 MERLELKEVQRLEGHNDRVWSLDWNPATGHAGTPLVFASCSGDKTVRIWEQDLSSGLWACKAVLDETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVATLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEMQPVNEFECVSVLQGHTQDVKMVKWHPTEDILISCSYDNSIKVWADEGDSDDWQCVQTLGQPNNGHTSTVWALSFNASGDKMVTCSDDLTVKVWETENVQSSSGFAPWRHLCTLSGYHDRTIFSIHWSREGIFASGAADDTIQLFGDDNESQVGGPLYTLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0705 343 PANTHER WD40 PROTEIN CIAO1 4 342 IPR028608 GO:0016226|GO:0097361
Lja1g0705 343 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 248 287 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 5 50 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 57 97 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 147 186 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 193 236 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 102 141 IPR001680 GO:0005515
Lja1g0705 343 SMART WD40_4 294 339 IPR001680 GO:0005515
Lja1g0705 343 CDD WD40 8 339 - -
Lja1g0705 343 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Lja1g0705 343 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Lja1g0705 343 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Lja1g0705 343 Pfam WD domain, G-beta repeat 61 96 IPR001680 GO:0005515
Lja1g0705 343 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Lja1g0705 343 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Lja1g0705 343 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Lja1g0705 343 Gene3D - 5 343 IPR015943 GO:0005515
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 143 IPR001680 GO:0005515
Lja1g0705 343 SUPERFAMILY WD40 repeat-like 4 338 IPR036322 GO:0005515
Lja1g0705 343 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 342 IPR028608 GO:0016226|GO:0097361
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 239 - -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Lja1g0705 343 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 343 - -
Lja1g0705 343 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Lja1g0705 343 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Lja1g0705 343 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Lja1g0705 343 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 342 - -
Lja1g0705 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 343 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0705 80 342 U-box Gene Family AT2G33340 26.236 2.14e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0705 K24730 - gmx:100778826 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0705 1 6781222 6787006 Lja1g0705 1 6781222 6787006 ECH