Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0698 ATGCATAAAATGCCTGGGACAAGACAAAGAGATGTAACAGCCCAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAAAAACCCACAGATTCTGATGAGCAGGTAGACTTTGATGGGGACAATGATCAAGAGGAAGAAATTGAATATGAAGAAGTAGAGGAGGAAGAAGAAGTGGAAGATGAAGAAGTTGAAGAGGTGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGTAGAGGAAGAGAGTAAGCCCTCAGATGGCGAGGAAGAGATGAGAGTAGATCATACTAATGATGAGGTTGAGAAAAAGAAACATGCTGAGCTACTTGCACTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGTATTGCTAACAATGTTTCTGAAGAAGATTTGAGAGTCTTTTGTCAATCTGTTGGAGAAGTGTCAGAGGTAAGAATTATGAAGGCGAAAGAATCCGGTGAAGGAAAAGGTTATGCTTTTGTGGCCTTCAAGACAAAGGAATTGGCCTCCCAGGCTATTGAGGAACTGAACAACTCTGAATTTAAGGGGAAAAAAATAAAGTGCTCATCATCCCAAGCTAAGCATAGGTTGTTCATTGGTAATATTCCTAAAAAATGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGATGTTGGCCCTGGAGTCATTTCTATTGAACTGCTGAAGGATCTACAGAGTTCTGGCCGTAATCGGGGCTTTGCTTTTATTGAGTATTACAACCATGCTTGTGCAGAATATTCGAGGCAGAAGATGTCAAACTCAAATTTTAAACTTGAAAATAATGCTCCAACAGTGAGCTGGGCTGACCCACGTAATTCTGAATCATCTGCAGTCTCCCAGGTAAAAGCAGTGTATGTAAAAAACCTTCCAGAAAACATTACTCAAGATAGTCTTAAGAAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATTTGGTTTTGTGCATTTTTCTGATAGGTCAAGTGCCATGAAGGCATTGAAGAATACAGAGAAATATGAAATTGATGGCAAAAATTTGGAATGTTCACTTGCTAAGCCGCAGGCTGACCAAAGGTCGTCCGGCACATCAAATTCACAGAAGCCAGTCGTACTTCCCACTTATCCACATCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGGCATCGGTGCAGGATACGGTGCTGCTGGCTTTGCACAACCACTTATGTATGGTATGGGAGCAAACCCTGCTGGCATGCCAATGATGCCAATGCTTCTACCAGATGGAAGAATTGGATATGTAGTGCAACAGCCAGGTTTGCAACAGCCAAGTTTGCAACAGCATGCTCCTTCACCAGTATCCCGACATGGCAGGAGGAGTGGTGGTGGTAGCTCAAGTGGTGGGAAGCGCGGCAATGACAATAACCGTGGGCATCGCCGATATAATCCCTACTAA 1491 0.4386 MHKMPGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDFDGDNDQEEEIEYEEVEEEEEVEDEEVEEVEEEEEEEEEEEEVEEESKPSDGEEEMRVDHTNDEVEKKKHAELLALPPHGSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGEGKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWADPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAGFAQPLMYGMGANPAGMPMMPMLLPDGRIGYVVQQPGLQQPSLQQHAPSPVSRHGRRSGGGSSSGGKRGNDNNRGHRRYNPY* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0698 496 MobiDBLite consensus disorder prediction 369 387 - -
Lja1g0698 496 Gene3D - 31 198 IPR012677 -
Lja1g0698 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Lja1g0698 496 MobiDBLite consensus disorder prediction 9 23 - -
Lja1g0698 496 SUPERFAMILY RNA-binding domain, RBD 288 380 IPR035979 GO:0003676
Lja1g0698 496 MobiDBLite consensus disorder prediction 453 483 - -
Lja1g0698 496 SUPERFAMILY RNA-binding domain, RBD 115 283 IPR035979 GO:0003676
Lja1g0698 496 SMART rrm2_1 119 192 IPR003954 GO:0003676
Lja1g0698 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 280 IPR000504 GO:0003723
Lja1g0698 496 Coils Coil 43 85 - -
Lja1g0698 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Lja1g0698 496 PANTHER - 16 494 - -
Lja1g0698 496 MobiDBLite consensus disorder prediction 453 496 - -
Lja1g0698 496 Gene3D - 199 279 IPR012677 -
Lja1g0698 496 CDD RRM_SF 120 192 - -
Lja1g0698 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 363 IPR000504 GO:0003723
Lja1g0698 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 267 IPR000504 GO:0003723
Lja1g0698 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Lja1g0698 496 MobiDBLite consensus disorder prediction 36 86 - -
Lja1g0698 496 PANTHER GEO13361P1-RELATED 16 494 - -
Lja1g0698 496 SMART rrm1_1 119 192 IPR000504 GO:0003723
Lja1g0698 496 SMART rrm1_1 293 366 IPR000504 GO:0003723
Lja1g0698 496 SMART rrm1_1 199 276 IPR000504 GO:0003723
Lja1g0698 496 MobiDBLite consensus disorder prediction 368 387 - -
Lja1g0698 496 MobiDBLite consensus disorder prediction 1 98 - -
Lja1g0698 496 Gene3D - 281 413 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0698 Lja-Chr1 6730848 6747330 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0698 120 437 Eukaryotic Initiation Factors Gene Family AT4G34110 23.967 5.35e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0698 K13161 - gmx:100798476 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0698 1 6730848 6747330 Lja1g0698 1 6730848 6747330 ECH