Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0697 ATGGATACATCGAATCCTGCAGTCTTTGTCAATGCAGAACTGTTGCAGTTCCATGTTGGAAGAAGGGTTCGTGCAGTAATGCAGGTTGTGAGATCTGATGGTGCAGTTGTTATTGGAAAATCAACTGATGACAAGCAGCTTGTTGTGAAAGGATCACCACCACCTGCTCCTCTCACAACTTTTGTTGAAGTTATTGGTATTGTTGACAGTGATAAGTCCATTCGCGCCGAGATGTGGACCAATTTTGGTGATTCAATTGATATGGTCAGCTACCAGAAGCTTTGTCAGCTTGCAAATGGTGAATTTAAGCACTTGTTCCTGTGA 324 0.429 MDTSNPAVFVNAELLQFHVGRRVRAVMQVVRSDGAVVIGKSTDDKQLVVKGSPPPAPLTTFVEVIGIVDSDKSIRAEMWTNFGDSIDMVSYQKLCQLANGEFKHLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0697 107 Pfam Replication factor A protein 3 1 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g0697 107 Gene3D - 1 107 IPR012340 -
Lja1g0697 107 CDD RPA3 6 99 - -
Lja1g0697 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A 1 107 - -
Lja1g0697 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Lja1g0697 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0697 Lja-Chr1 6727937 6728920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0697 1 107 Core DNA Replication Machinery Family AT4G18590 66.355 1.03e-51 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0697 K10740 - gmx:100306641 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0697 1 6727937 6728920 Lja1g0697 1 6727937 6728920 ECH
Lja1g0697 1 6727937 6728920 Lja5g1989 5 25804704 25814206 PCT