Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0693 ATGAAAGTGAAAGAAAAGGAGTTAATAACATTCACATTCCCACACTCTACTCTGGTTAGAGTTAGAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTTCGTTTCGATGGCAAAGGCGAACCTATCGAGCCTCCCTGAGCGCATAGCAGCATCCTCCTCCACCCTCACTCCCAACAACCCCTCCGGCGAGGCTTTAGAGGTCCGCTTCTGCACCGTCCTCCCCAATCTCCTACACGCTTACGTCGTCCCTTCTTCCTCACGCAACAACGACAGAGAAGTCATCGCCGTCGTCAAGCTCATCTCTCACACCGCCCGAAACTTCCCTGGCGTCTTCTTCCTCGGCAAGCCCTCCGCTGTCTTGCCCGTCCTCGCTGATATCCTCCCTTCCTACGCAGACCCTCTCTTTCGGTCTCGTCACAGAGTCTTTTTTGAAGCTCTCGGTTCACTCCTCTCCTTGTTTCGCTCTGGAGCACGAGATGCTTCCACACACTTCTTCCTTGACCCCATGCTCCTCATTCTAGAGATGAGATTCAATCATACTAATGATGAGGTTGAGAAAAAGAAACATGCTGAGCTACTTGCACTTCCACCTCATAGTTCAGAGGTCTACATTGGGGGCATTGCTAACAATGTTTCTGAAGAAGATTTGAGAGTCTTTTGTCAATCTGTTGGAGAAGTGTCAGAGGTAAGAATTATGAAGGCGAAAGAATCCGGTGAAAGAAAAGGTTATGCTTTTGTGGCCTTCAAGACAAAGGAATTGGCCTCCCAGGCTATTGAGGAACTGAACAACTCTGAATTTAAGGGGAAAAAAATAAAGTGCTCATCATCTCAAGCTAAGCATAGGTTGTTCATTGGTAATATTCCTAAAAAATGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGATGTTGGCCCTGGAGTCATTTCTATTGAACTGCTGAAGGATCTACAGAGTTCTGGCCGTAATCGGGGCTTTGCTTTTATTGAGTATTACAACCATGCTTGTGCAGAATATTCGAGGCAGAAGATGTCAAACTCAAATTTTAAACTTGAAAATAATGCTCCAACAGTGAGCTGGGCTGAACCACGTAATTCTGAATCATCTGCAGTCTCCCAGGTAAAAGCAGTGTATGTAAAAAACCTTCCAGAAAACATTACTCAAGATAGTCTTAAGAAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCTGCTAAATCTGGACAAGAAAAGAGCAGATTTGGTTTTGTGCATTTTTCTGATAGGTCAAGTGCCATGAAGGCATTGAAGAATACAGAGAAATATGAAATTGATGGCAAAAATTTGGAATGTTCACTTGCTAAGCCGGAGGCTGATCAAAGGTCGTCCGGCACATCAAATTCACAGAAGCCAGTCGTACTTCCCACGTATCCACATCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGGCATCGGTGCAGGATACGGTGCTGCTGGCTTTGCACAACCACTTATGTATGGTATGGAGGTCCGCTTCTGCACCGTCCTCCCCAATCTCCTACACGCTTACGTCGTCCCTTCTTCCTCCGGCAACAACGACAGAGAAGTCATCGCCGTCGTCAAGCTCATCTCTCACACCGCCCGAAACTTCCCTGGCGTCTTCTTCCTCGGCAAGCCCTCCGCTGTCTTGCCCGTCCTCGCTGATATCCTCCCTTCCTACGCAGACCCTCTCTTTCGGTCTCGTCACAGAGTCTTTTTTGAAGCTCTCGGTTCACTCCTCTCCTTGTTTCGCTCTGGAGCACGAGATGCTTCCACACACTTCTTCCTTGACCCCATGCTCCTCATTCTAGATACACTTGATGTCAATGCACCCTTCAGTTTAACGTTCAACTGTTTTCCCAAGTCCTTCAATGGAATTGAAGATAATCCATCAACCAACAAACCGGTTGATGGGTGTGGGTTGTTGGTTGATATCAGTGACCAAAGTAGGTGGCTGCCTTTTGCCACTTACACTTTGAAGCTTCTCAGTAAATGTATGACTGAAGGGACACTCTATGTTGAAGGATTGATCCGTTCATCGTTCGTTTCCGCTGCTTGTTGTTTTTTATGCTATCGGGATACTGATTTGCATATGGCGTGCTTGGACTTTCTGCACATCATTGCAACTGTCATAAACTATGATATCATTCCTTATCAGAATTTAATTCGCTCAATAGCTACTATCTTGAGTTTGGAAAAGGAGGGGCTTCCTGTTTTCAGGAACACAGCTTATGATTCATGGATAGTTGTCTGCCTCAATGCACTCTACTCTATCTGTCCAGAAGATATTGTCAAATTAACAGCTTCTGATTTGGTCAGCGTATTCTTCCAATCAATCTGGAGAACCAAAAGCCAGCAACTTAAGGTTAACACTCGTGCTTGCTTTTCGCTAGAACAGCTCACTTTATTATTCCCCAGCGTCTTCTGCCACGGCAAGCCCATTGCCGTCTTGCCCGTCCTCGCTGAGATCCTCTCGTTCTACGCAGACCCTCTCTTTCGGTCTCGTCATATAGTCTTTTTTGAAGCTCTCGGTTCACTCCTCTCCTTGCTTCGCTCTGCTGCACGAGATGCTTACGGACACTTCTTCCTTGATTCCATGCTCCTCATTCTAGATTTTCACGTTGCTGACTCAACATCTGAGTTGTGTGCTTTTCAGTTTAGGAATCAAATGTTTACAAAGCCAGCTGGTAAAGACAAGGGAAATAATTGGAAAATTCAAAGAGATGTGAAGGGTCCTCCTAAGCCTGAAAAGAAAATCAAAGGGAGCGGTAAAAGTTCTAGAAAGAGGGAGTCAAAAACCCCTAAACCTCCTAGAGATTTAACAACTTCCAAAGTTGTGAAGAAACCAAGTAGAAAATCTCTCCTTATTGGCATTTGTTACCCCGGAAGAGTCGATGAAAAAGGGAAAAGTGAGCAGTTGAATAGGAGTCTCGCAACAATAGAGGTGATTCAGCTTCTCCTAACTCACTTCTATAAGTTTGAGAAGCAAAACATTTTGCTTCTTTCAGATGATAGAAGAAAAAAGTATAAAAAGCCAATCAAATTGAATGTAGAAGCAGAATTGAGGAGATTGGTAGAAGAAGCAATTTCCGGTGACATTCTCTACGTCCACATCGCTGGTCATGGCTTTGGGGGATCAGATGCGGATGAACCTCATGTGATCAGTAGTGATGATATTCAAATCACAGCATCTCTATTGTGTGAGATCATGGAGCAAGTGAAAGTCGGGGTGAAACTAACCATGGCCATAGAAGTGTGCTTCTCCGCCATAATATGCGGAAGAGTTATGGAACTTCTGCAACTAACTGATAGAAAAAATATGGGTGAAATTGTGATGTTTGCAATATCAGGTGCAGGTGAGGGATGGGAAGCACTTTTTTATGATAAGGTTCTGGTAGGTAAGAATACCCTATTCAAGAATGCTAGAGATAAAAGTGTGGGGGAAGTTGTGGATATGTGGCGGTCTGTCATGACTATTGACCCAAAGCTTCTCCCCGAGAACAAAAGAGTACATGACATAGAAGTTTTCCCTCAAGAAGCTCTTCATATAACATTTCCAATTTCTTAG 3600 0.4439 MKVKEKELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVLPNLLHAYVVPSSSRNNDREVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLSLFRSGARDASTHFFLDPMLLILEMRFNHTNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAGFAQPLMYGMEVRFCTVLPNLLHAYVVPSSSGNNDREVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLSLFRSGARDASTHFFLDPMLLILDTLDVNAPFSLTFNCFPKSFNGIEDNPSTNKPVDGCGLLVDISDQSRWLPFATYTLKLLSKCMTEGTLYVEGLIRSSFVSAACCFLCYRDTDLHMACLDFLHIIATVINYDIIPYQNLIRSIATILSLEKEGLPVFRNTAYDSWIVVCLNALYSICPEDIVKLTASDLVSVFFQSIWRTKSQQLKVNTRACFSLEQLTLLFPSVFCHGKPIAVLPVLAEILSFYADPLFRSRHIVFFEALGSLLSLLRSAARDAYGHFFLDSMLLILDFHVADSTSELCAFQFRNQMFTKPAGKDKGNNWKIQRDVKGPPKPEKKIKGSGKSSRKRESKTPKPPRDLTTSKVVKKPSRKSLLIGICYPGRVDEKGKSEQLNRSLATIEVIQLLLTHFYKFEKQNILLLSDDRRKKYKKPIKLNVEAELRRLVEEAISGDILYVHIAGHGFGGSDADEPHVISSDDIQITASLLCEIMEQVKVGVKLTMAIEVCFSAIICGRVMELLQLTDRKNMGEIVMFAISGAGEGWEALFYDKVLVGKNTLFKNARDKSVGEVVDMWRSVMTIDPKLLPENKRVHDIEVFPQEALHITFPIS* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0693 1199 MobiDBLite consensus disorder prediction 911 931 - -
Lja1g0693 1199 PANTHER GEO13361P1-RELATED 179 506 - -
Lja1g0693 1199 MobiDBLite consensus disorder prediction 906 955 - -
Lja1g0693 1199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Lja1g0693 1199 SMART rrm2_1 201 274 IPR003954 GO:0003676
Lja1g0693 1199 SMART rrm1_1 201 274 IPR000504 GO:0003723
Lja1g0693 1199 SMART rrm1_1 281 358 IPR000504 GO:0003723
Lja1g0693 1199 SMART rrm1_1 375 448 IPR000504 GO:0003723
Lja1g0693 1199 MobiDBLite consensus disorder prediction 937 955 - -
Lja1g0693 1199 Gene3D - 912 1131 - -
Lja1g0693 1199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 362 IPR000504 GO:0003723
Lja1g0693 1199 Gene3D - 174 280 IPR012677 -
Lja1g0693 1199 Gene3D - 281 361 IPR012677 -
Lja1g0693 1199 SUPERFAMILY ARM repeat 514 849 IPR016024 -
Lja1g0693 1199 SUPERFAMILY RNA-binding domain, RBD 196 365 IPR035979 GO:0003676
Lja1g0693 1199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 349 IPR000504 GO:0003723
Lja1g0693 1199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 272 IPR000504 GO:0003723
Lja1g0693 1199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 445 IPR000504 GO:0003723
Lja1g0693 1199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 452 IPR000504 GO:0003723
Lja1g0693 1199 CDD RRM_SF 202 274 - -
Lja1g0693 1199 Gene3D - 362 495 IPR012677 -
Lja1g0693 1199 SUPERFAMILY RNA-binding domain, RBD 371 462 IPR035979 GO:0003676
Lja1g0693 1199 PANTHER - 179 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0693 Lja-Chr1 6691372 6702835 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0693 199 458 Eukaryotic Initiation Factors Gene Family AT4G34110 27.306 7.67e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0693 K13161 - gmx:100798476 517.694