Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0678 ATGGAAAACATGCCACCAGGTTATCGTTTCTACCCCACAGAACAAGAGATTATTACATTCTATCTTCGCAATAAGCTTGAAGGACAAAAGGAGCACATGAATCGGGTTATACCAGTCCTTAATATATATGATTACAATCCATCACAACTCCCACAACTTTCAGGAGAAGCGAGTACGAGAGACACGGAGCAATGGTTCTTTTTCATTCCGAGGCAGGAAAGTGAAGCCAGAGGAGGGAGACCGAAGCGTCTCACAACTAGTGGGTACTGGAAGGCTACGGGGTCTCCTAGTCGCGTTTATTCTTCTGACGGTTCTGCAATCGGCATGAAAAGGACCATGGTGTTCTACAATGGAAGGGCTCCCAGAGGAAAGAAAACCGATTGGAAAATGAATGAGTACAAGGCCCTCCAACAGGGTGGACTAGAATTAAGGCAGGAATTCAGTTTGTGCCGAGTGTACAAGAAAACAAAGTGCTTGCGAGCATTTGATAGACGACCGTCACCGCCAATTAGGAGGGACATTATAACAGGTAGCAGCAGCAGCAATCCTAATCAAGATGATGAACCTGCACAATCCCAGAAGGGTTCAGGGTCAACACATGTTCAAGTGATGGAGGAGAGAAGTGTAATTATAACAAGCTCACCAGAGAGCTCTCCCTCACAGGATGGAGGAGAAGGAGAAGCTGCCCAAATGCAGATTGATAACGAGCCTCTGTTGGATTGGGAGCAAGTCGATTGGTTCTTGGGATTGGAACCATGA 759 0.4638 MENMPPGYRFYPTEQEIITFYLRNKLEGQKEHMNRVIPVLNIYDYNPSQLPQLSGEASTRDTEQWFFFIPRQESEARGGRPKRLTTSGYWKATGSPSRVYSSDGSAIGMKRTMVFYNGRAPRGKKTDWKMNEYKALQQGGLELRQEFSLCRVYKKTKCLRAFDRRPSPPIRRDIITGSSSSNPNQDDEPAQSQKGSGSTHVQVMEERSVIITSSPESSPSQDGGEGEAAQMQIDNEPLLDWEQVDWFLGLEP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0678 252 MobiDBLite consensus disorder prediction 173 225 - -
Lja1g0678 252 Gene3D NAC domain 13 159 IPR036093 GO:0003677|GO:0006355
Lja1g0678 252 SUPERFAMILY NAC domain 2 155 IPR036093 GO:0003677|GO:0006355
Lja1g0678 252 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 246 - -
Lja1g0678 252 MobiDBLite consensus disorder prediction 164 237 - -
Lja1g0678 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 246 - -
Lja1g0678 252 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Lja1g0678 252 ProSiteProfiles NAC domain profile. 4 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0678 Lja-Chr1 6475874 6477142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0678 7 246 NAC Transcription Factor Family AT5G22380 47.410 7.29e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g0678 NAM 5.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0678 - - gmx:100777948 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0678 1 6475874 6477142 Lja1g0678 1 6475874 6477142 ECH