Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0672 ATGGCGGCTATCAGAAGAATAATTGCTTCCAACAAAACCCTCTCTCCATATCTTCTCACTTTCACCAGGGGAATCGCCTTCAAACTTTTCGTTGGAGGACTGTCCTTCCACACCAATGAAACAACATTGTCAGATGCATTTTCCAATTACGGACAAGTTATTGATGCCAAAGTTGTGACAGATAGGGTGTCAGCTAGGTCTAAAGGGTTTGGTTTTGTCACCTTTGCTTCACAAGATGAGGCTGAGAATGCCATGGCAGAGATGAATGGAAAGGCACTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCTGATACCAAAACTGGTTTTGAAATGCCAATTGCCAGAGGACCTCCTGAAGACCAGAACCAAACACAGACAGTTGATTCACCTCAGGCCATGTGA 408 0.4338 MAAIRRIIASNKTLSPYLLTFTRGIAFKLFVGGLSFHTNETTLSDAFSNYGQVIDAKVVTDRVSARSKGFGFVTFASQDEAENAMAEMNGKALNGRVIFVDYAKPDTKTGFEMPIARGPPEDQNQTQTVDSPQAM* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0672 135 Gene3D - 24 131 IPR012677 -
Lja1g0672 135 SMART rrm1_1 28 101 IPR000504 GO:0003723
Lja1g0672 135 MobiDBLite consensus disorder prediction 120 135 - -
Lja1g0672 135 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Lja1g0672 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Lja1g0672 135 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 125 - -
Lja1g0672 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Lja1g0672 135 MobiDBLite consensus disorder prediction 112 135 - -
Lja1g0672 135 PANTHER TRANSFORMER-2-RELATED 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0672 Lja-Chr1 6303219 6304822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0672 29 113 Eukaryotic Initiation Factors Gene Family AT2G23350 29.412 1.56e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0672 - - lja:Lj1g3v4721740.1 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0672 1 6303219 6304822 Lja1g0672 1 6303219 6304822 ECH