Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0669 ATGTCCATAAACCAGCAGCAGCTATGGTGGACCCAGCACCAGCAGCAAAATCTCATTCACCCCCAGTTTCACAACCCACTTTCTTCTTCTCCTTCTCCTTCTCCTTCTTCTTCCTCCACTCACCGGCGCGAAGACGGAGAATTAGACCAAGAAGAACAGGACTACTCCATCACCAGGTCAAGGAATAAAGAAGATGAAGAGCCAGCAGAGGAAGAGATGGAAGGAATGTTCGAGAAGCCATTGACACCGAGTGATGTTGGGAAGCTGAACCGCCTCGTCATCCCAAAGCAGCACGCGGAGAAGCACTTCCCTCTTGACTCGGCGGAGAGCAAGGGGATGTTGCTGAGTTTCGAGGACGAGTCAGGGAAGTTGTGGCGATTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTATGTCTTGACAAAAGGATGGAGCCGTTACGTCAAGGACAAACGCCTCGACGCCGGCGACGTCGTTTTGTTCCACAGACACCGCGCTCACCCTCACCGCTTCTTCATCACCTGCCGGCGGAGAAACGCCCAACCAGCACCCAATGCCGCCGCTGCCTTCTATCCTCCGGCTCCTCACCCCTTCACATACCACCCTCATCTTCATACAGGTGGAGGGTCCCAAGGTCAGAATCATAAGGAGGAGAGCGCACCGGGAGGAAACAGTTCCGGTTCAAAGGTGCTGAGGCTATTTGGGGTGAACATGGAATGCCAACTACCTGATTCCCAAACACAACAATTCTACCACCACCATCATCAACAACCCTCTTCTTATTCTTCTCCCAATAACACTCACCATCACATGCTACGTCAACAACCATATTAG 834 0.5252 MSINQQQLWWTQHQQQNLIHPQFHNPLSSSPSPSPSSSSTHRREDGELDQEEQDYSITRSRNKEDEEPAEEEMEGMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSAESKGMLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRAHPHRFFITCRRRNAQPAPNAAAAFYPPAPHPFTYHPHLHTGGGSQGQNHKEESAPGGNSSGSKVLRLFGVNMECQLPDSQTQQFYHHHHQQPSSYSSPNNTHHHMLRQQPY* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0669 277 MobiDBLite consensus disorder prediction 40 66 - -
Lja1g0669 277 ProSiteProfiles B3 DNA-binding domain profile. 77 179 IPR003340 GO:0003677
Lja1g0669 277 CDD B3_DNA 76 177 IPR003340 GO:0003677
Lja1g0669 277 SUPERFAMILY DNA-binding pseudobarrel domain 76 179 IPR015300 -
Lja1g0669 277 MobiDBLite consensus disorder prediction 14 81 - -
Lja1g0669 277 MobiDBLite consensus disorder prediction 14 39 - -
Lja1g0669 277 Gene3D - 71 186 IPR015300 -
Lja1g0669 277 MobiDBLite consensus disorder prediction 206 226 - -
Lja1g0669 277 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 12 255 - -
Lja1g0669 277 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 255 IPR044800 GO:0003700
Lja1g0669 277 Pfam B3 DNA binding domain 77 178 IPR003340 GO:0003677
Lja1g0669 277 MobiDBLite consensus disorder prediction 200 228 - -
Lja1g0669 277 MobiDBLite consensus disorder prediction 247 277 - -
Lja1g0669 277 SMART B3_2 77 178 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0669 Lja-Chr1 6266149 6268104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0669 74 244 RAV Transcription Factor Family AT5G06250 52.500 1.57e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g0669 B3 7.4e-30 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0669 - - lja:Lj1g3v4722780.1 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0669 1 6266149 6268104 Lja1g0669 1 6266149 6268104 ECH