Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0642 ATGGACGCTTCTTCTTCTCGAACCTTCCTCCTCCTCACTCTCCTCTTCGCCGCGGCGGCGCCACTCTATCTACCACCAGTCCTCTCCGCCACCGACCCTAACGACGTCAAAATCCTCCACCAGTTCAGGAAAGGCCTCGAAAATCCAAACCTCCTTCCCTGGCCGGAACAAGGCGGCGACCCATGTGGCACCCCGCGTTGGGATTACATCTTCTGCGACGGCGACCGGGTTGCGCAGATTCAAACAAAGAATTTAAACCTCACCGGCCCTTTACCGCAGAATCTCAACCAGCTCACCGAGCTTTTCAACTTGGGTCTTCAGAACAACAAGCTCAACGGGCCGTTACCGTCGTTGAAGGGGTTGTCGAAGCTGAAGTATGCGTTCTTTGATAACAACAATTTCGATTCCATTCCTTCTGATTTCTTCGAGGGGTTGGAGAGCTTGGAGGTGATGGCATTGGACAGGAACAACGATCTGAATGCTAGCAGTGGTGGGTGGCAGTTTCCGAATTCGTTGCAGGGGTCGACTCAGTTGACCAATCTCACTTGCTTGGGTTGCAATCTGGCGGGTCCTTTACCGGGTTTTCTCGGGGAGTTGAATTCCTTGTCGGTTTTGATTCTCGCCGGGAATAATTTGTCCGGCGAGATTCCGGCGAGTCTGAACGGCTCCGGCTTGCAGGTTCTGTGGTTGAATAACCAGAAGGGTGGGGGTTTTACCGGGAGTATTGACGTGGTGGCTACCATGGCTTCTCTCACGAGCTTGTGGCTTCATGGGAACAAGTTCAGTGGGTCAATTCCGGGGAACATTGGGGACTTGGCTACTCTCAAGGATCTCAACCTCAATGGAAACCAGCTCGTTGGGCTGATCCCTGATGCTTTAGGTAACATGGAATTAGATAATTTGAATTTGAACAATAACCAGTTGATGGGTCCAATCCCAAATTTCAAAGCATCTAAGGTTTCTTATGAGAATAATGATTTCTGTCAAACCAAACCGGGTGTTCCCTGCGCCTTTGAAGTCATGGCGCTTTTGGGGTTTCTTGGTGGGTTGAATTACCCTTCAAATCTTGTTGGTTCCTGGACTGGGAATAACCCTTGTGAGGGTCCTTGGTTGGGGATAAAGTGCAATGCAAATGGAAAGGTTTCTATAATTAATTTGCCACACTTTAATCTTAATGGTACTTTAAGTCCTTCTGTTGGAAACTTGGGTTCTCTTACTGAAATCAGATTGGGGGGTAACAATCTCAGTGGTGTGGTGCCTGGTAATTGGACTAGCTTGAAGTCTTTGACATTGTTAGATCTTAGTGGCAATAACATTTCTCCTCCCCTGCCAAAGTTTACAAATGGCTTGAAACCTGTGATTGATGGGAATCCTCTATTCAGTGGTAACCCGGAAGCTCCTTCCTCAGGGAGCACTAGCCCATCATCTGGATCTGGGAATGCTGAGCCCACACCATCACACTCGAATTCAAGTGATTCTCCTGAAACGAAAAAAACCAAAAGGAAAAACTTGGTTTTGATAGTAGCCCCCATTGCGGGTGTGGCGGCTGCTGCTTTTATGCTAATTCCGCTTTATGCATATTGTTTCAGGAAGAGAAAGGATGGCTTGCAGGCTCCAAGTTCAATAGTAGTTCACCCTAGAGATCCATCTGATTCAGACAGTACCGTAAAGATTGCCATTGCTAATAATACCGATGGAAGCACTTCCACCGTAACAGGGAGTGGGACTGGGAGTTGGAACAGCAGTGCAAGGGATTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTAAGAAATGTGACCAAGAATTTTGCCCCTAAGAATGAACTTGGCCGTGGTGGATTTGGGGTTGTTTATAAGGGCGAGTTGGATGATGGGACTAACATTGCCGTAAAAAGAATGGAATCAGGTGTGATTAGTAATAAAGCCTTGGACGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTCCGGCACCGGCATCTAGTGTCCCTTTTAGGTTACTCAACTGAAGGAAATGAGAGGATTCTAGTATATGAGTATATGCCCCAGGGGGCTCTCAGTAAGCATCTTTTCCACTGGAAGAGCTTTGAAATGGAGCCCCTTTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTCGAGGATTGGAGTATCTTCATACTCTGGCTCACCAAAGCTTCATCCACAGAGATCTCAAGTCATCAAATATTTTGCTTGGTGATGATTTCAAAGCAAAAATCTCAGATTTTGGATTGGTAAAACTTGCCCCTGAAGGTGATGAAAAATCTGTAGTGACCAGGCTTGCTGGAACTTTTGGATACTTAGCTCCAGAATATGCAGTGACAGGAAAAATCACAACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTGCTGACTGGATTGATGGCGCTTGATGATGACAGACCTGAAGAAAGCCAATACTTGGCGGCATGGTTCTGGCACATAAAATCTGATAAGAAGACACTAATGGCTGCTATTGACCCTGCTCTTGATGTAAAGGAAGAAATATTTGAGAGCATCTCCATCATTGCTGAGCTAGCTGGGCACTGCACCGCCAGAGAACCGAGCCAGCGGCCAGATATGGGTCATGCTGTGAATGTTCTGGCACCGCTTGTTGAAAAATGGAAACCATTTGATGACGACACCGAGGAGTATTCCGGCATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGCTGGCAGGAGGCAGAAGGAAAGGACTTAAGTTATATCGACCTTGAAGACAGTAAGAGTAGCATCCCTGCAAGGCCTACTGGATTTGCAGAATCTTTTACTTCAGCTGATGGCCGATGA 2868 0.4686 MDASSSRTFLLLTLLFAAAAPLYLPPVLSATDPNDVKILHQFRKGLENPNLLPWPEQGGDPCGTPRWDYIFCDGDRVAQIQTKNLNLTGPLPQNLNQLTELFNLGLQNNKLNGPLPSLKGLSKLKYAFFDNNNFDSIPSDFFEGLESLEVMALDRNNDLNASSGGWQFPNSLQGSTQLTNLTCLGCNLAGPLPGFLGELNSLSVLILAGNNLSGEIPASLNGSGLQVLWLNNQKGGGFTGSIDVVATMASLTSLWLHGNKFSGSIPGNIGDLATLKDLNLNGNQLVGLIPDALGNMELDNLNLNNNQLMGPIPNFKASKVSYENNDFCQTKPGVPCAFEVMALLGFLGGLNYPSNLVGSWTGNNPCEGPWLGIKCNANGKVSIINLPHFNLNGTLSPSVGNLGSLTEIRLGGNNLSGVVPGNWTSLKSLTLLDLSGNNISPPLPKFTNGLKPVIDGNPLFSGNPEAPSSGSTSPSSGSGNAEPTPSHSNSSDSPETKKTKRKNLVLIVAPIAGVAAAAFMLIPLYAYCFRKRKDGLQAPSSIVVHPRDPSDSDSTVKIAIANNTDGSTSTVTGSGTGSWNSSARDSHVIEAGNLVISVQVLRNVTKNFAPKNELGRGGFGVVYKGELDDGTNIAVKRMESGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSTEGNERILVYEYMPQGALSKHLFHWKSFEMEPLSWKRRLNIALDVARGLEYLHTLAHQSFIHRDLKSSNILLGDDFKAKISDFGLVKLAPEGDEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDDDRPEESQYLAAWFWHIKSDKKTLMAAIDPALDVKEEIFESISIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYIDLEDSKSSIPARPTGFAESFTSADGR* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0642 955 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Lja1g0642 955 Pfam Leucine rich repeat N-terminal domain 340 376 IPR013210 -
Lja1g0642 955 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Lja1g0642 955 Gene3D Transferase(Phosphotransferase) domain 1 686 905 - -
Lja1g0642 955 MobiDBLite consensus disorder prediction 457 499 - -
Lja1g0642 955 SUPERFAMILY L domain-like 30 317 - -
Lja1g0642 955 SUPERFAMILY Protein kinase-like (PK-like) 587 885 IPR011009 -
Lja1g0642 955 SUPERFAMILY L domain-like 339 450 - -
Lja1g0642 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Lja1g0642 955 Gene3D Phosphorylase Kinase; domain 1 573 685 - -
Lja1g0642 955 PANTHER OSJNBA0070M12.3 PROTEIN 23 955 - -
Lja1g0642 955 CDD STKc_IRAK 614 888 - -
Lja1g0642 955 Gene3D Ribonuclease Inhibitor 338 461 IPR032675 -
Lja1g0642 955 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 23 955 - -
Lja1g0642 955 ProSiteProfiles Protein kinase domain profile. 608 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0642 955 Gene3D Ribonuclease Inhibitor 32 334 IPR032675 -
Lja1g0642 955 Pfam Protein kinase domain 611 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0642 955 SMART LRR_typ_2 272 295 IPR003591 -
Lja1g0642 955 SMART LRR_typ_2 402 425 IPR003591 -
Lja1g0642 955 SMART LRR_typ_2 248 271 IPR003591 -
Lja1g0642 955 SMART LRR_typ_2 199 223 IPR003591 -
Lja1g0642 955 SMART LRR_typ_2 426 450 IPR003591 -
Lja1g0642 955 SMART LRR_typ_2 121 144 IPR003591 -
Lja1g0642 955 SMART serkin_6 608 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0642 955 MobiDBLite consensus disorder prediction 462 492 - -
Lja1g0642 955 MobiDBLite consensus disorder prediction 935 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0642 Lja-Chr1 5954871 5958738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0642 95 922 Receptor kinase-like Gene Family AT1G55610 30.219 7.15e-85 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lja1g0642 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0642 - - gmx:100305366 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0642 1 5954871 5958738 Lja1g0642 1 5954871 5958738 ECH