Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0641 ATGCAAAGCGTGGAGAAGAGGACGGTGCTTCCATCAGATAAAACCCATGACTCAGAGTGCTTCTACAAGAATCTCACTGCGTTGTTGGAGTCTTCTGGACTGAGTTTAATTTTGAATGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGATATCATCAGGTTGACCAAGAAAAGAAATGGGGTGAAGTGGTCTCTGCACTAAAATTAGAAGGAAGTAATGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCAAATCTTCTTTACGAATTCGAGCAATTGTACTTCTACAGGTGTCCTACAAAGCAAGCCAGCACCAAAGGTCCACTTAAGAGGAAGCGGAATTTAACTCAATTAATGGATAAGGAAAATGTTCAGAGGGTGACAATGTGCAAGGACTACTCTTCCCAAAAGACAGCTGAGGGTGGATATGTAGAGCCAGTGCTTCAACCGGCACCTTCAAATGACAAAGGAAGGAAGAAACGCGGAGGTGCTCCAACAGGACGAAGGACTGCATATCAGATATTCGTCAAGCAGGAATGTGCTCGATTGAGAGCTTGTAGTGAGGACTCCTTAGATCGCACGAGATTCCTACGCATGGCTATTGACACATGGAAGAACATGTCTGAGATTGAGAAACAGCCATATATGGAGGAAAGCAAGAAGAACAAGGAAAAACACAAGGAGGAGGAAAACAATAAACAGAAGAACGCACAAGATATGAAGCAAGTAAACAAGCCAACTAGTCAGTGTGGTGATTATTCTGTACCTTCACAGCCTGAGACAGATAACTCAATTGTGAGTGCAGAACTTGGCTTAGCTCTTAAAATGACTTGGGAAGTAATGACTGGAAAAGCACCCGAGGAGTCCTTACAGGAATGGGATACTTATTTTTCAGAACTAGATTTACCAACTGGTGAATCCAAGTAA 939 0.426 MQSVEKRTVLPSDKTHDSECFYKNLTALLESSGLSLILNDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGSNAKLSAQVEMLYANLLYEFEQLYFYRCPTKQASTKGPLKRKRNLTQLMDKENVQRVTMCKDYSSQKTAEGGYVEPVLQPAPSNDKGRKKRGGAPTGRRTAYQIFVKQECARLRACSEDSLDRTRFLRMAIDTWKNMSEIEKQPYMEESKKNKEKHKEEENNKQKNAQDMKQVNKPTSQCGDYSVPSQPETDNSIVSAELGLALKMTWEVMTGKAPEESLQEWDTYFSELDLPTGESK* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0641 312 MobiDBLite consensus disorder prediction 216 266 - -
Lja1g0641 312 Pfam ARID/BRIGHT DNA binding domain 21 95 IPR001606 GO:0003677
Lja1g0641 312 SUPERFAMILY ARID-like 13 100 IPR036431 GO:0003677
Lja1g0641 312 Gene3D - 3 118 IPR036431 GO:0003677
Lja1g0641 312 CDD ARID 21 95 - -
Lja1g0641 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 286 - -
Lja1g0641 312 MobiDBLite consensus disorder prediction 145 172 - -
Lja1g0641 312 Gene3D High mobility group box domain 156 236 IPR036910 -
Lja1g0641 312 MobiDBLite consensus disorder prediction 241 266 - -
Lja1g0641 312 Pfam HMG-box domain 169 235 IPR009071 -
Lja1g0641 312 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 169 238 IPR009071 -
Lja1g0641 312 ProSiteProfiles ARID domain profile. 1 99 IPR001606 GO:0003677
Lja1g0641 312 SMART ARID_2 12 95 - -
Lja1g0641 312 MobiDBLite consensus disorder prediction 216 240 - -
Lja1g0641 312 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 15 286 - -
Lja1g0641 312 SUPERFAMILY HMG-box 154 234 IPR036910 -
Lja1g0641 312 SMART bright_3 16 100 IPR001606 GO:0003677
Lja1g0641 312 Coils Coil 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0641 Lja-Chr1 5943237 5946367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0641 8 233 ARID Transcription Factor Family AT1G55650 23.938 7.38e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g0641 HMG_box_2 1.1e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0641 - - lja:Lj1g3v4740410.1 603.979