Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0640 ATGGACATTTCACCGCCATCGGAGAGTTTCTTCGAGCTGCCCTACCAGCAACACAACCAACTTTGCTTTAGAGATCAGTTCGATGATTTTGAAAATTTCAGCCACCATTTCAACCTTCCCGCTGACATGGCGCATTGCAATGGTTCTAGCAGCAACGAAGGTAATGCGAAAGCGAGTAGCAGCAGAAAGAAGAAGGAGAAGGAAGAGGAGAAACCCGGTAGTAGCAAAAGGAAGAAGACTTCTTCTTCACGTGTGTTGGATTTTGATGAAATAAAGAAGCATTTTGAGGTTACGCTAACAGAGGCGGCAAAGGAAATGAATGTTGGGTTGACCCTCCTCAAGAGAAAGTGCAGAGACCTCAATATTATGAGGTGGCCACACAGGAAGCTCAAGAGTTTGAAGTCTGTCATCGACAATGAATTGGGACTCGAAGATGAGCTTGGCATGTTGGAGAAGCAAAAAAACATGTTGGAGAGAATGCCAGAAATGGAGCTGAGTAAGGAAACAAAGAAGTTGAGACAATCCTGTTTTAAAGCTAATTACAACAAGAAGAGGAGAAAACAGAACACACAAGACTAA 579 0.4335 MDISPPSESFFELPYQQHNQLCFRDQFDDFENFSHHFNLPADMAHCNGSSSNEGNAKASSSRKKKEKEEEKPGSSKRKKTSSSRVLDFDEIKKHFEVTLTEAAKEMNVGLTLLKRKCRDLNIMRWPHRKLKSLKSVIDNELGLEDELGMLEKQKNMLERMPEMELSKETKKLRQSCFKANYNKKRRKQNTQD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0640 192 PANTHER PROTEIN RKD4 52 186 - -
Lja1g0640 192 MobiDBLite consensus disorder prediction 58 83 - -
Lja1g0640 192 PANTHER PROTEIN RKD4 52 186 IPR044607 GO:0003700
Lja1g0640 192 ProSiteProfiles RWP-RK domain profile. 70 153 IPR003035 -
Lja1g0640 192 MobiDBLite consensus disorder prediction 45 83 - -
Lja1g0640 192 Pfam RWP-RK domain 86 133 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0640 Lja-Chr1 5939990 5940664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0640 86 192 AtRKD Transcription Factor Family AT5G53040 55.046 1.25e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja1g0640 RWP-RK 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0640 - - aprc:113850801 167.162