Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0635 ATGGCGACGTACTATCATGGTAACTCCGAAATCCAATCAGCTGGCGGCGGCGCCGACGGACTCCAAACTCTAGTTCTCATGAATCCCGGCAGCTACATCCAATACTCAGACAACACGCCGCAGCAACCACCGCAGTCCCACACCGCCTGCAATCTCGTCTTCCTCAACGCCGCCTCTGCCGCAAGCAACAACAACAACAACTCCTTCTCCCCCCACGCGCCGCCCACTCACGGCCAACAATTCGTCGGCATCCCTCTCCAAGCCTCGTCCTCACAAGACCTCAACCACCACCACCAGCAGCACCATCATTCCGTCGACGTTCCATCCTTGCATGGCTTCATGCCCCGCATGCAGTACAATCTCTGGAACACAATTGACGGCAACCCGGCGGCGCGTGACACACCACGCGCTCAGCAAGGGCTTTCCCTGAGCCTCTCCCCGCAGCAGGTGCAGATGGGGTCTTTTCGGGAGGGACAGGCGCAGGCACTGTCTGGCGGGTCGCCGTCTTCCGCTTCTGGGGTGACTCACAATGGTGCTTCCGGGGTTCAGAGTGTGCTTCTGAGCTCAAAGTATTTGAGAGCAGCGCATGAGCTTCTAGAAGAGGTGGCGAATGTTAACACTGAATTGGCGAAGAAGAGTGGTGGACCGAACAATAGGCTGATCGGAGAGTCGTCGGTGGCAGGTAGTGGAGGTGGGGAAGGGAGTGAGAAGCGTAGCGCTGAGCTTTCAACTGCGGAAAGACAAGAAATTCAGATGAAGAAGGCAAAGTTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCACAACCAGATGGAGATTGTGGTTTCATCGTTTGAGCAAGCTGCAGGGATTAGCTCAGCGAGAACTTACACTGCACTTGCACTGCAAACAATCTCCAAGCAGTTCCGGTGTCTGAAAGATGCAATAACAGGCCAAATTCGAGCAGTGAATAAGAACTTGGGAGAAGAGGATTGCTTTGGAGGTAAAATGGAAGGTTCAAGACTCAAATATGTAGACCATCATCTAAGGCAACAGCGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCCTATCCAAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAGATGAAGGAGCATGAGAACAATGGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCAAAGAAAATGGCTGCAGCATCTCAAGAGAAAGGTCCTATCTCTGAAACTGAAGCTGGAAGTTTCAATTCCAAAGGCCAAGACAATCCTGCAGTTTCAGTTTCTAGACCACCAACATCACCAATGGGAGGAAATGTCAGAAACCAATCAGGATTCAGCTTCATGGGATCATCAGAACTTGAAGGAATCACACAAGGAAGTCCCAAGAAACAAAGGAACCAGGAAATGATGCATTCGACAAACAGTGTCCCTTCAATCGACATGGATGTCAAGTCCAATGATGCAAACAATGAGCATCTTTCAATGAAATTTGGTGATGAGAGGCAGCAAGGCAGAGATGGGTACTCTTTCATGGGAAACCAAACAAACTTCATGGGAGGTTTTGGACAGTATCCAATTGGTGATATTGGTAGGTTTGATGCTGAGCAATTCACACAAAGGTTTTCAGGTAATGGAGTGTCTCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTCCCAAACCAGAACATTCAACTGGGAAGAGGCCTTGACATCAGTGAACCGAACGAGTTCGACGCCATGAACACTTCTTCTCCTCACTCTTCAGCTGCTGCTTATGAGACTATCAGCATGCAAAACCCAAAGAGGTTTGCAGCACAATTGTTGCCAGACTTTGTGACATGA 2034 0.4921 MATYYHGNSEIQSAGGGADGLQTLVLMNPGSYIQYSDNTPQQPPQSHTACNLVFLNAASAASNNNNNSFSPHAPPTHGQQFVGIPLQASSSQDLNHHHQQHHHSVDVPSLHGFMPRMQYNLWNTIDGNPAARDTPRAQQGLSLSLSPQQVQMGSFREGQAQALSGGSPSSASGVTHNGASGVQSVLLSSKYLRAAHELLEEVANVNTELAKKSGGPNNRLIGESSVAGSGGGEGSEKRSAELSTAERQEIQMKKAKLISMLDEVEQRYRQYHNQMEIVVSSFEQAAGISSARTYTALALQTISKQFRCLKDAITGQIRAVNKNLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEHENNGSEDKSSKSNEDSSKKMAAASQEKGPISETEAGSFNSKGQDNPAVSVSRPPTSPMGGNVRNQSGFSFMGSSELEGITQGSPKKQRNQEMMHSTNSVPSIDMDVKSNDANNEHLSMKFGDERQQGRDGYSFMGNQTNFMGGFGQYPIGDIGRFDAEQFTQRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRGLDISEPNEFDAMNTSSPHSSAAAYETISMQNPKRFAAQLLPDFVT* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0635 677 Gene3D - 366 445 - -
Lja1g0635 677 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Lja1g0635 677 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 7 618 - -
Lja1g0635 677 MobiDBLite consensus disorder prediction 433 451 - -
Lja1g0635 677 MobiDBLite consensus disorder prediction 157 176 - -
Lja1g0635 677 MobiDBLite consensus disorder prediction 210 224 - -
Lja1g0635 677 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 618 - -
Lja1g0635 677 Pfam Associated with HOX 185 314 IPR006563 -
Lja1g0635 677 SMART prehox3 180 315 IPR006563 -
Lja1g0635 677 MobiDBLite consensus disorder prediction 433 540 - -
Lja1g0635 677 Coils Coil 247 274 - -
Lja1g0635 677 MobiDBLite consensus disorder prediction 466 540 - -
Lja1g0635 677 MobiDBLite consensus disorder prediction 210 245 - -
Lja1g0635 677 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Lja1g0635 677 CDD homeodomain 363 423 IPR001356 GO:0003677
Lja1g0635 677 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Lja1g0635 677 SMART HOX_1 363 427 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0635 Lja-Chr1 5859955 5863607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0635 1 676 Homeobox Transcription Factor Family AT2G35940 48.925 2.63e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja1g0635 POX 1.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0635 - - gmx:100810901 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0635 1 5859955 5863607 Lja1g0635 1 5859955 5863607 ECH
Lja1g0635 1 5859955 5863607 Lja5g2411 5 46051621 46054490 PCT