Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0633 ATGGATGAAGTTGATGTTCCTTCATACTTTCTCTGCCCAATCTCATTGGAAATCATGAAGGATCCAGTAACAGTCACCACCGGCATCACCTACGACAGAGAAAGCATTGAGAAGTGGCTATTCTCCAAGAACAACACCAAAACCATCACATGTCCTGTCACAAAACAACCACTCTCAGATTGCAGCGCAGATCTCACCCTCACACCAAACCACACCCTCCGCCGCCTCATCCAAGCCTGGTGCACCATGAACGCTTCTCACGGCGTTGAAAGAATCCCAACACCAAAGCCTCCGGTCAACAAAACCCAGATCTCAAAGCTTCTCAAAGACGCTTCTCGTTCTCCCCTGATGCAAATCAAGTGTCTGCAAAGACTCAAATCCATCGCTTCCGGAAGTGAAACAAACAAACGATGCATCGAAGCTGCTGGGGGTGTTGAGTTTTTAGCCTCAATTGTCATGAACAGCATTGATTCTGCAGTTACTTCACCAGAGGATAATGGTTTTGAGCTCAGAACAAGTGCAGGGGATGAAGCTTTAAGCATTCTCCATCATCTGAATCTATCAGAGCCCGGGTTGAAGACTCTGTTATCATTCAAAAACGGAGACTTCATCGCTTCCTTGACAAGGGTTATGCAAAAGGGGTTCTTCGAATCACGAGCCTACGCAGTTTTCTTGCTGAAATCCATGTCTGGAATTGCAGACTCAGTGCAACTGTTCAACCTTAAGACTGAATTTTTCGTGGAGCTAGTGCAAGTTCTGAGGGACGAGATTTCTCTGAAGGCAACAAAAGCAACAATTCAAACACTGATTCAAGTTTGTCCTCTGGGGAGGAACAGAGTCAAAGCGGTGGATGCAGGCTCTGTCTTTGTCCTAACAGAGCTTCTTCTGAATTGCAAGGAAAGAAAGCCCTGTGAGATGATGCTGGTGCTGCTGGATTTGCTGTGCCAGTGTGCTGAGGGGCGTGCAGAGCTTCTGAGCCACGCGGCGGGGCTCGCCGTTGTGTCGAAGAAGATTCTGCGGGTTTCGACGGTGGCGAATGACAGGGCAGTGAGGATTCTGCTCTCTGTGTGTAGATTCTCTGCTTCTCCGAGTGTTCTTCAGGAGATGCTGAAGCTTGGGGTGGTGGCGAAGCTCTGTTTGGTGCTTCAGGTGGACAGTGGAAGCAAGGCGAAGGAGAAGGCGAGGGAGATTCTGAAATTGCACGGAAAGGCGTGGAGGCATTCTCCATGCATACCAAGCAGTTTGCTCTCTGCGTTTTCAGCTTTTGCTTGA 1272 0.4874 MDEVDVPSYFLCPISLEIMKDPVTVTTGITYDRESIEKWLFSKNNTKTITCPVTKQPLSDCSADLTLTPNHTLRRLIQAWCTMNASHGVERIPTPKPPVNKTQISKLLKDASRSPLMQIKCLQRLKSIASGSETNKRCIEAAGGVEFLASIVMNSIDSAVTSPEDNGFELRTSAGDEALSILHHLNLSEPGLKTLLSFKNGDFIASLTRVMQKGFFESRAYAVFLLKSMSGIADSVQLFNLKTEFFVELVQVLRDEISLKATKATIQTLIQVCPLGRNRVKAVDAGSVFVLTELLLNCKERKPCEMMLVLLDLLCQCAEGRAELLSHAAGLAVVSKKILRVSTVANDRAVRILLSVCRFSASPSVLQEMLKLGVVAKLCLVLQVDSGSKAKEKAREILKLHGKAWRHSPCIPSSLLSAFSAFA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0633 423 Pfam U-box domain 6 84 IPR003613 GO:0004842|GO:0016567
Lja1g0633 423 PANTHER WDSAM1 PROTEIN 1 420 IPR045185 GO:0061630
Lja1g0633 423 Gene3D - 100 408 IPR011989 -
Lja1g0633 423 CDD RING-Ubox_PUB 10 56 IPR045210 -
Lja1g0633 423 SUPERFAMILY ARM repeat 104 398 IPR016024 -
Lja1g0633 423 ProSiteProfiles U-box domain profile. 5 87 IPR003613 GO:0004842|GO:0016567
Lja1g0633 423 SUPERFAMILY RING/U-box 3 87 - -
Lja1g0633 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 420 - -
Lja1g0633 423 SMART Ubox_2 9 80 IPR003613 GO:0004842|GO:0016567
Lja1g0633 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0633 Lja-Chr1 5833680 5835324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0633 1 421 U-box Gene Family AT3G52450 55.882 1.14e-172 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0633 - - gmx:100811258 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0633 1 5833680 5835324 Lja1g0633 1 5833680 5835324 ECH
Lja1g0633 1 5833680 5835324 Lja5g2407 5 45887979 45891611 PCT
Lja5g2406 5 45840720 45842620 Lja1g0633 1 5833680 5835324 PCT