Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0629 ATGGCTTCTACAACCTCTGTTTCCTCTTCTATCTGCAACAGAATCTACAACCTCTCCTTCAAACATTCTTCCCTTGCACTCACCTGCAACTTCTCTCAAAGACCCATATCTCAAAAAGCCTTCAATCTCAACCTCAAGTTCCAAAGTTTTATTCTTTCCCCACTTTCACTTCACCGTCTTCACCCACCATCTGCTTCCACTGATGAATTTGAAGTGGCTCAAGACAGCACAGATTCCCGACAAGACAACCCAGAACCAGAACCAGAAACAGAAACCTCTGATAAACCACAACAAGAGGAAGAGCAGAAGGTATCAACTTCCAGTGATGATAGGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACTTCTTCGCAATTGACTGAGATCTTTGTAGAAGCTGGCACTGTGGTGTCTGTTGAGGTAATGTACGATCGAGTCACGGATAGGAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGATGATGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGATTGTCAGGGTGAACTTCCCGGAGGTGCCCAAAGGAGGTGAAAGGTTAGTAATGGGGCCAAAAATACGGAACAACAACAGAGACTTTGTGGACAGCTCTCACAAGATATATGCTGGAAACCTTGGCTGGAGAGTGAGCTCTCAGGATCTTAAAGATGTTTTCGCTGAGCAGCCTGGCTTAGTCAGTGCCAAGGTCATCTATGAGAGAGACAGTGGAAGGTCTCGAGGTTTTGGGTTTGTCACTTTCGAAACTGCTCAAGATGTAGAAGCTGCTTTGAAAACTATGAATGGTGTGGAGGTTCAAGGTCGGGAATTGCGATTGAACTTGGCTGCTGTAAAGGCACCTTCATCTCCTTCAGTAACTGAGGAAAATGAAGGAAGTAGTGTTGATACCTCTGAATTGGTGTCTAGTGCCAGCACATGA 963 0.4486 MASTTSVSSSICNRIYNLSFKHSSLALTCNFSQRPISQKAFNLNLKFQSFILSPLSLHRLHPPSASTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSSVDTSELVSSAST* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0629 320 SUPERFAMILY RNA-binding domain, RBD 210 296 IPR035979 GO:0003676
Lja1g0629 320 Gene3D - 198 312 IPR012677 -
Lja1g0629 320 SUPERFAMILY RNA-binding domain, RBD 107 187 IPR035979 GO:0003676
Lja1g0629 320 PANTHER OS02G0815200 PROTEIN 4 302 - -
Lja1g0629 320 MobiDBLite consensus disorder prediction 294 320 - -
Lja1g0629 320 MobiDBLite consensus disorder prediction 293 320 - -
Lja1g0629 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Lja1g0629 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Lja1g0629 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Lja1g0629 320 Gene3D - 63 195 IPR012677 -
Lja1g0629 320 CDD RRM_HP0827_like 112 188 - -
Lja1g0629 320 MobiDBLite consensus disorder prediction 73 108 - -
Lja1g0629 320 MobiDBLite consensus disorder prediction 63 110 - -
Lja1g0629 320 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 302 - -
Lja1g0629 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lja1g0629 320 SMART rrm1_1 215 288 IPR000504 GO:0003723
Lja1g0629 320 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0629 Lja-Chr1 5794039 5796166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0629 98 293 Eukaryotic Initiation Factors Gene Family AT3G16380 31.000 6.68e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0629 - - aprc:113861916 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0629 1 5794039 5796166 Lja5g2400 5 45726149 45730129 PCT