Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0628 ATGGCGATGCAAACTGCTAATCTCATAGAACATGAAGGGATTGCGCACAATTTTGTTGGGCAGTTGTCATCTGCAACTTCAGCACCATGGTGGAGTGCTTTTGGATCTCAAGCTGTTTATGGTGAGTCTTGTGGCCAAATGAAACCCTTTTCGTTGGAGCCGCCTATCTCGGTAGACCAACTTGCTGCCGGTAAGCAATCGGCTAGAGGAGCTGAACAAGTGTTGGCCAAAGGACACACAACTCAGTTTACCATCTTCCCAGATGATTGTAAAGTGTTAGGTAATGCACAGAAGCCTCAGACAACCATATCACTGCAGTCATCACCTACTGATACCCACTCTCGTTTTGAGCTAGGATTTAGTCAGCCTATGATCTGTGCTAAGTATCCTTACACGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACCTGACAACCGATGAAGGACCAATTTACGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATCGCAAAATGACTAAACGTCGTAAGCCCTATTTGCATGAGTCCCGCCATCTCCATGCACTGCGACGACCAAGAGGATGTGGTGGTCGTTTCTTGAACACAAAGGTTTCTGCTAATGGAAATGGCAAAACTGGAAGGGACGTGAAGAAAACTGGTGGTGAACAGCTACAGTCCAGTGGTTCTCAGGGTTCTGATGTCTTTCAATCTGAGGTTGGAACTTTAAACTCTTCGAAAGAGACTAATGGGAGCAGTCCAAATGTTTCTGGTTTAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTGACACCTTTTCTTTCAACCATCTTGGATCTTCTGTCTACCCTCTGGCAGACATGGTCGATTGTGGGCGTGGCATCATGCCCACAAAATGGGTTGCAGCGGGAGGTAACAGCTGCAACCTTAACACTTGA 987 0.463 MAMQTANLIEHEGIAHNFVGQLSSATSAPWWSAFGSQAVYGESCGQMKPFSLEPPISVDQLAAGKQSARGAEQVLAKGHTTQFTIFPDDCKVLGNAQKPQTTISLQSSPTDTHSRFELGFSQPMICAKYPYTDQFYGLFSTYGPQISGRIMLPLNLTTDEGPIYVNAKQYHGIIRRRQSRAKAVLDRKMTKRRKPYLHESRHLHALRRPRGCGGRFLNTKVSANGNGKTGRDVKKTGGEQLQSSGSQGSDVFQSEVGTLNSSKETNGSSPNVSGLEVTSMYSRGGFDTFSFNHLGSSVYPLADMVDCGRGIMPTKWVAAGGNSCNLNT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0628 328 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Lja1g0628 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 324 - -
Lja1g0628 328 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Lja1g0628 328 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Lja1g0628 328 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Lja1g0628 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Lja1g0628 328 Gene3D - 159 220 - -
Lja1g0628 328 MobiDBLite consensus disorder prediction 236 252 - -
Lja1g0628 328 MobiDBLite consensus disorder prediction 220 252 - -
Lja1g0628 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 324 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0628 Lja-Chr1 5779416 5783131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0628 1 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.376 3.00e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja1g0628 CBFB_NFYA 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0628 K08064 - gmx:100527677 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0628 1 5779416 5783131 Lja1g0628 1 5779416 5783131 ECH
Lja1g0628 1 5779416 5783131 Lja5g2397 5 45660840 45665057 PCT