Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0627 ATGACTTGCAACAAGCGTGATAAGAATTCTGCAATCCGTTTCTTTAAGATCATCACAGCAACAAGTCTTGAAGCTGGAAAATTGAAGGTTCCAAATGGTTTCACTAGGAAACATGGTGGTGATGTGTCAAATTCAGTGTTTCTGAAGCCTCCAGATGACAAAAAATGGAAGATACACTGGACTAAAGATCAAGATGGTTATATTTGGTTTGAAAAGGGTTGGAAAGAATTTGCTTCATACTACTCCCTTGATCATGGCCACTTGATATTGTTTGAATACAACAAGACAGTGCCTTCTCATTTTGAAGTCCACATATTTGACAAAAGTACCCTTGAAATAGAATATCCTTTCCATGGGAGTAAAGATGAACAGAACAACTTTGATCAGATTTTGGATGAGAGACAGAAATGTAAGAAGAGTAGACTGAAATCACCAGAGTCATGTCCTCAGCCAAGGAAGAAATTGAGAACTTGCACAAGTGGAAATGTTGGAAGAAGCTCCAAATTGCCAAAGATGCCTCAGCATGTTAATGGGACAGAATTTGAGAACTCAACATTTGCTGATGGGAATGTGGGTGGTGGTGCCCTTGAATGCCTAAAAAGGAACAAGTTAACTTGTAAAAATACTAAAATCCCCTCTTTCAGATCTGTTATTAAACCTTCCTATGTTAGTGAATACTTGCATGTTCGATTAGATTTTGCAAAAAAGCATTTGGAGAACAACCAAAGTGATATCATCATCCTTCATGACATGGATGGGAAAACTTGGAATGTTAAATATCTTCATGGAAGAAGTAGAATCAGTTCTGGATGGAGGAAATTTGTGTTAGACAATAATTTGAAAGTGGGGGATGTTTGTGATTTTGTGTTAACCAAAAGCCAACCTCTTTCTTTCAAAGTATCAATCTTGCAACTTGGGGGAGATCAACCACATTCTACTCCACCACAAGAATCTAGAGTTAATGGCTTAGACCCTGCAGCAATAATCATAGATGAAGAACGTGAAACTACTATTAACAGGAAAGCTCTAAACCAAGCAAATGAATTCGCCTCAGAATTGGAAAATCCCTATTTCATCGTCCAGATAAAGCCAAGTAACCGGAGGGATTACAGACAGGAAGTATGTATTGACTTTGTCAGAAACTACTTCAGTCGAAAGCAGTGGTTGATGTTACGATTTGAAAAGAAACCGTGGCGTGTGAAGTTGAACCGTTATCCTAACGCGGGTACTGCCAAGTTGTGTAAAGGTTGGGCCAGGTTTGCAAGAAAAATTAAATTGGTAGCTGGAGATGTTTGTGTATTCGAACTCATCAACAAGGAAGATGCACATGCTGTGCCTGAGCTTGATGTTCATGTTTTCAAAGGCTAA 1368 0.3867 MTCNKRDKNSAIRFFKIITATSLEAGKLKVPNGFTRKHGGDVSNSVFLKPPDDKKWKIHWTKDQDGYIWFEKGWKEFASYYSLDHGHLILFEYNKTVPSHFEVHIFDKSTLEIEYPFHGSKDEQNNFDQILDERQKCKKSRLKSPESCPQPRKKLRTCTSGNVGRSSKLPKMPQHVNGTEFENSTFADGNVGGGALECLKRNKLTCKNTKIPSFRSVIKPSYVSEYLHVRLDFAKKHLENNQSDIIILHDMDGKTWNVKYLHGRSRISSGWRKFVLDNNLKVGDVCDFVLTKSQPLSFKVSILQLGGDQPHSTPPQESRVNGLDPAAIIIDEERETTINRKALNQANEFASELENPYFIVQIKPSNRRDYRQEVCIDFVRNYFSRKQWLMLRFEKKPWRVKLNRYPNAGTAKLCKGWARFARKIKLVAGDVCVFELINKEDAHAVPELDVHVFKG* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0627 455 SMART B3_2 14 109 IPR003340 GO:0003677
Lja1g0627 455 SMART B3_2 214 306 IPR003340 GO:0003677
Lja1g0627 455 SMART B3_2 358 454 IPR003340 GO:0003677
Lja1g0627 455 MobiDBLite consensus disorder prediction 153 167 - -
Lja1g0627 455 CDD B3_DNA 13 107 IPR003340 GO:0003677
Lja1g0627 455 ProSiteProfiles B3 DNA-binding domain profile. 13 109 IPR003340 GO:0003677
Lja1g0627 455 SUPERFAMILY DNA-binding pseudobarrel domain 208 304 IPR015300 -
Lja1g0627 455 MobiDBLite consensus disorder prediction 141 175 - -
Lja1g0627 455 CDD B3_DNA 212 303 IPR003340 GO:0003677
Lja1g0627 455 ProSiteProfiles B3 DNA-binding domain profile. 212 306 IPR003340 GO:0003677
Lja1g0627 455 ProSiteProfiles B3 DNA-binding domain profile. 396 455 IPR003340 GO:0003677
Lja1g0627 455 Pfam B3 DNA binding domain 215 302 IPR003340 GO:0003677
Lja1g0627 455 Pfam B3 DNA binding domain 361 442 IPR003340 GO:0003677
Lja1g0627 455 Pfam B3 DNA binding domain 14 108 IPR003340 GO:0003677
Lja1g0627 455 SUPERFAMILY DNA-binding pseudobarrel domain 352 453 IPR015300 -
Lja1g0627 455 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 303 - -
Lja1g0627 455 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Lja1g0627 455 Gene3D - 6 110 IPR015300 -
Lja1g0627 455 PANTHER B3 DOMAIN-CONTAINING 6 303 - -
Lja1g0627 455 PANTHER B3 DOMAIN-CONTAINING 334 441 - -
Lja1g0627 455 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 334 441 - -
Lja1g0627 455 Gene3D - 198 305 IPR015300 -
Lja1g0627 455 Gene3D - 336 455 IPR015300 -
Lja1g0627 455 CDD B3_DNA 356 454 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0627 Lja-Chr1 5754689 5758088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0627 329 441 B3 DNA Binding Superfamily AT3G18990 33.613 8.58e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g0627 B3 1.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0627 - - lja:Lj0g3v0253159.1 516.153