Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0616 ATGGGAAACAATTGCTTTGGGTGGAGAGTCTGGAACGATGATGATGAACTATTTCCCTCTGCTTTTCCAGGTTCATTTTGGTGGTCACAGCCAATGAGGGGAATGAAAATTTCCTCTGCACCTTCACATGTGAGTGAAAATCCAAACACAAATGCTGCAGAAACTGTTCAACAGAATGCACCAGACACAGTTCAACCCAGTAAACAGGACAAAGATACTAGTAAGCCTTCTGAGCAAGAGCAACAAATAAGGTTGAAGGAAGAGGAAACAAGGCCAACACCAACAACGAGACAAAGGGATGTTTTTGTTAAGAGGGTAGGAGTAGTAGCAAGTGCTGGACTTCAAGCTGATTCAGTTTTGCTGAGAAAAACTTGTCATCTGAAAGAGCACTATAATTTGGGACCTGAGATTGGGAATGGACAATATGGAACAACTTTCCGTTGCTTGGAGAAAGCTACCGGGAAAAACTACGCGTGCAAGTCCATTCCCAAGGTAAAATTGCTAACACGTGATGATGTTAAGGATGTGAGGAAGGAGATTCAGATAATGCACCACTTAGCGGGGATGAGTCCCAATTTGATATCTATTAAAGGGGCTTATGAAGATGCTGTTGCAGTTCATCTTGTCATGGAATTATGTGAAGGGGGTGAGCTGTTTGATAGGATTATTGAAAAGGGGCATTACGCAGAAAGAAAGGCTGCAAAACTTGCAAGGACTATAGTTAGTGTTGTAGATAATTGCCACTCTCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGACATGAAGATTCCACCCTTAAGGCAATAGATTTTGGGATGTCAGTTTTCTTCAAACCAGGAGATATTTTTAGTGACGTGGTAGGAAGTCCTTGTTATATTGCACCTGAAGTTCTACGCAGGCGTTATGGTCCAGAAGCTGATGTCTGGAGTACAGGTGTAATCATATACATTCTCTTATGCGGAACACTTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGAGATTTTGCATGGTTATCTTGATTTCTCTTCAGATCCTTGGCCCAATATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAAAAAACGGATTACAGCACAAGAAGTTCTTCGCCATCCTTGGATTCAGGCTTATGGAGTTGCTCAAGACAAGCCTCTTGATTCTGTAGTTTTGAGTCACCTGAAGCAATTCTCTGCAATGAACAAGCTTAAGAAAATGGTTCTTAGAGTTATTGCAGCAAATCTCTCTAAAGAAGAAATTTTTGGTTTGAAAGAAATGTTTAAGATGATAGACACAGACAATAGTAGTCAAATTACCTTTGAAAAACTCAAGGTTGGACTGAAAACATTTGGTGCTACTCTCAGTGAATCCGAAATTTTCGATCTAATGCAAGCTGCAGATGTTGATAATAATGGCACAGTTGACTATGAAGAATTCATGGCAGCGACGTTGCATTTAAACAAACTTTATAGGGAAGATCATTTAGCTGCAGCTTTCTCATATTTTGATAAATATGGAAGTGGCTACATCACTCAAGATGAGCTTCAAAAAGCTTGTGCAGAATTCGGCATGGAGGATGTTCTCTTGGAGGAATTGATCCGAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGGTAGTAGTAAGCATGGTGTAAAGGGTAGCACTAGCACTAGTTTTAGCATTGGATTTAGTGAGGCAGTGGAACTATCAGTATGTTAA 1812 0.4034 MGNNCFGWRVWNDDDELFPSAFPGSFWWSQPMRGMKISSAPSHVSENPNTNAAETVQQNAPDTVQPSKQDKDTSKPSEQEQQIRLKEEETRPTPTTRQRDVFVKRVGVVASAGLQADSVLLRKTCHLKEHYNLGPEIGNGQYGTTFRCLEKATGKNYACKSIPKVKLLTRDDVKDVRKEIQIMHHLAGMSPNLISIKGAYEDAVAVHLVMELCEGGELFDRIIEKGHYAERKAAKLARTIVSVVDNCHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFSDVVGSPCYIAPEVLRRRYGPEADVWSTGVIIYILLCGTLPFWGESEQEIFEEILHGYLDFSSDPWPNISESAKDLVRKMLVRDPKKRITAQEVLRHPWIQAYGVAQDKPLDSVVLSHLKQFSAMNKLKKMVLRVIAANLSKEEIFGLKEMFKMIDTDNSSQITFEKLKVGLKTFGATLSESEIFDLMQAADVDNNGTVDYEEFMAATLHLNKLYREDHLAAAFSYFDKYGSGYITQDELQKACAEFGMEDVLLEELIREADQNNDGRIDYNEFVAMMQRGNADLGSSKHGVKGSTSTSFSIGFSEAVELSVC* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0616 603 ProSiteProfiles EF-hand calcium-binding domain profile. 539 574 IPR002048 GO:0005509
Lja1g0616 603 Pfam EF-hand domain pair 508 569 IPR002048 GO:0005509
Lja1g0616 603 ProSiteProfiles EF-hand calcium-binding domain profile. 505 538 IPR002048 GO:0005509
Lja1g0616 603 CDD EFh 438 497 IPR002048 GO:0005509
Lja1g0616 603 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Lja1g0616 603 Gene3D - 415 574 - -
Lja1g0616 603 ProSitePatterns EF-hand calcium-binding domain. 552 564 IPR018247 -
Lja1g0616 603 SUPERFAMILY Protein kinase-like (PK-like) 120 413 IPR011009 -
Lja1g0616 603 CDD STKc_CAMK 130 389 - -
Lja1g0616 603 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Lja1g0616 603 MobiDBLite consensus disorder prediction 68 95 - -
Lja1g0616 603 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Lja1g0616 603 Pfam Protein kinase domain 132 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0616 603 PANTHER SERINE/THREONINE-PROTEIN KINASE 104 579 - -
Lja1g0616 603 SMART serkin_6 131 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0616 603 Gene3D Transferase(Phosphotransferase) domain 1 218 414 - -
Lja1g0616 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lja1g0616 603 Gene3D Phosphorylase Kinase; domain 1 134 217 - -
Lja1g0616 603 CDD EFh 509 569 IPR002048 GO:0005509
Lja1g0616 603 SMART efh_1 473 501 IPR002048 GO:0005509
Lja1g0616 603 SMART efh_1 543 571 IPR002048 GO:0005509
Lja1g0616 603 SMART efh_1 509 537 IPR002048 GO:0005509
Lja1g0616 603 SMART efh_1 437 465 IPR002048 GO:0005509
Lja1g0616 603 MobiDBLite consensus disorder prediction 56 98 - -
Lja1g0616 603 SUPERFAMILY EF-hand 429 570 IPR011992 -
Lja1g0616 603 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 104 579 - -
Lja1g0616 603 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Lja1g0616 603 Pfam EF-hand domain pair 452 500 IPR002048 GO:0005509
Lja1g0616 603 ProSiteProfiles Protein kinase domain profile. 131 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0616 Lja-Chr1 5670373 5673340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0616 1 592 EF-hand Containing Proteins AT5G04870 61.935 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g0616 Pkinase 3.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0616 K13412 - gmx:100814475 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0616 1 5670373 5673340 Lja5g2382 5 45153263 45158660 PCT