Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0613 ATGGAAAGCAAAACTGAAGGTCACATGACATCAGCTGCGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACTGTTTGCAGGCATGAGTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAAAACATTAGCTTGAAGGATCCTACCAGTCAGGAATTGTTTGAGGGAGTAGAGCACGAGAGGAGGTTGAGGGAGACTCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCCTTGGTGATTTTGACCTGCAGCACTTAAGCATGGGTGTTAATGATGGTGATTTTGAAGAGCGACTAATTCAACATTTAGCCGCTGCAGCAGCAATGAGGAGACACCACCTTGTTCGTAGGGAAGGACAGAGAACTCGATCATCTGCTCAGGGTCATCCCCATTTCTTAGTATTCTCAACTCAGCCTATTGCATCTCCACTAGGTCCTGATTCAGCAGCTGGAGGGGGAAATGAACCAGCTGTAATTCCTGTAGGAAGTCCATCTACCCCAATAGCATTTGATGGAGATGAACCATCACAGCAGATCTCACATATTCGAACTCAACGCTCCTCTTCATCTTCTGGATCTGGCATGGCAACAAATCGCCAAGGAATTTACTCTAGTGATAGAGGCTCTGCTGCTCCTTCTTCACCTGCAAGCCAAGATAGAGCAGGGCCGTCGGAGTTGCAGTCATTTTCGGATTCTCTGCGGTCCAAACTAAATTCGGTATCCATGAGATATAAGGAGTCAATTTCAAAGGGTGCCAGGGGATGGAAGGAAAGATTGTTCTCTCGAAGTTCTTCCATGTCTGAACCTGGTTCTGAAGCTAGGAGTGAGGTGAATGCTGAAATTGCTAGTGTATCCCAGTTGATGGAATCCCTTGAAACTAGAAAAAACACTAGAGTGCATTCGGAGGATGGTGGTTCAATGGCAGAGGTGAACAACCAGAGCAGCGTTGAAGCTAGAGGAGACAACTCTCCACACCACGACAATTCTCCAGCTGCTTGTTCTGCTAGCTCACATTCAAGTTGA 1113 0.4672 MESKTEGHMTSAAAFVEGGIQESCDDACSICLEEFCESDPSTVTVCRHEFHLQCILEWCQRSSQCPMCWQNISLKDPTSQELFEGVEHERRLRETPSRNAAIFHHPALGDFDLQHLSMGVNDGDFEERLIQHLAAAAAMRRHHLVRREGQRTRSSAQGHPHFLVFSTQPIASPLGPDSAAGGGNEPAVIPVGSPSTPIAFDGDEPSQQISHIRTQRSSSSSGSGMATNRQGIYSSDRGSAAPSSPASQDRAGPSELQSFSDSLRSKLNSVSMRYKESISKGARGWKERLFSRSSSMSEPGSEARSEVNAEIASVSQLMESLETRKNTRVHSEDGGSMAEVNNQSSVEARGDNSPHHDNSPAACSASSHSS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0613 370 MobiDBLite consensus disorder prediction 168 260 - -
Lja1g0613 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 369 - -
Lja1g0613 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 3 369 - -
Lja1g0613 370 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Lja1g0613 370 SMART ring_2 28 68 IPR001841 -
Lja1g0613 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Lja1g0613 370 SUPERFAMILY RING/U-box 21 76 - -
Lja1g0613 370 MobiDBLite consensus disorder prediction 319 370 - -
Lja1g0613 370 Coils Coil 304 324 - -
Lja1g0613 370 MobiDBLite consensus disorder prediction 200 260 - -
Lja1g0613 370 Pfam Ring finger domain 27 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0613 Lja-Chr1 5644865 5649581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0613 25 76 C3H Transcription Factor Family AT4G00335 44.231 2.54e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0613 K19043 - gmx:100800419 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0613 1 5644865 5649581 Lja1g0613 1 5644865 5649581 ECH
Lja1g0613 1 5644865 5649581 Lja6g0091 6 1642766 1646010 PCT