Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0609 ATGGATAATGCACTAAGCAGCGGAATAAGTAGAGGGAAATCGGATGAGCTAGTGGAGGCGGAGGGTGGTGGGAGTAGTACCGGGTCCACAACGCTGTCGAGGAAATCGAGTAGAAGGATGTCACCGAAGAACACGCACATAAGGAAAGCAAGGAGCGCACAGTTGAAGGTGGAGGTGGATGAGGTTAGCAGTGGAGTGGCTCTTAGCAGAGCTTCAAGTGCCAGCTTGGGCCTCTCTTTCTCCTTCACTGGTTTCACTCTCCCTCCTGATGAAATCTCTGACACCAAGCCCTTCAGTGATGATGATATCCCTGAAGATATTGAAGCTGGAACTCATAAGCCAAAGTTTCAAACAGAACCTACTCTGCCACTATATCTAAAGTTCAAGGATGTGACCTACAAGGTAGTGATTAAGGGCTTGACCACAAGTCAGGAGAAGGATATCTTGAAGGGGATTACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCTTTGATGGGTCCTTCAGGAAGTGGAAAGACATCTTTGTTAAATTTGCTTGGAGCAAGAACAAGTCAGTCCATCAATGATGGCTCTATCACTTACAATGATCTACCCTATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTGCTCACCTAACTGTGAAAGAAACACTGACATACGCAGCCCGCCTTAAGCTGCCAAATACATTAACAAGAGAGCAAAAGGAACAACGAGCTTTAGATGTCATTGTTGAGCTAGGCTTGGAGAGGTGCCAGGACACTATGATAGGAGGTTCTTTTGTTAGAGGAGTATCAGGTGGAGAGAGGAAGAGAGTTTGTATTGGAAATGAGATCCTAATCAATCCTTCTCTTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCCACAACAGCCTTGAGAATAGTTCAGATGCTACATGACATAGCAGAGGCTGGTAAAACTGTTGTGACAACAATTCATCAACCATCAAGCAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGTAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTACTTCAAACTTATAGGGTGTTCTCCTCTTATTTCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACATGAATGATATTTCAGTACCATCAGAATTAAAGGATAAAGTACATATGGGAAATTCAGAAGCTGAAACATGCAATGGGAAACCATCAGCTGCAGTTGTACAAGAGTATCTTGTGGAGGCATATGAGACTCGAGTTGCAGAAACCGAGAAGAAAAAGTTAATGGTTCCTATCCCCCTTGACAAAGATTTGAAGTCCAAGGTTTGTTCTCAGAAAAGACAGTGGGGGGCAAGTTGGTTAGAGCAGTTTTTCATATTATTCTCAAGAGGATTCAAAGAAAGGAGACATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTATCCACTGCAATCATCTTAGGATTACTATGGTGGCAATCAGATTCTAGCAACCCAAAAGGTCTACAAGACCAGGCAGGACTTCTTTTCTTTATAGCAGTCTTTTGGGGATTCTTTCCTGTTTTCACAGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGGCAAAGGAAAGAGCATCAGACATGTACAGATTAAGTGCTTATTTCTTAGCTAGAACTACAAGTGACCTTCCACTTGATCTGGTATTGCCAGTGCTTTTCCTGCTAGTTGTTTATTTCATGGCTGGTTTGAGACTGAGTCCAGGGCCCTTTTTCCTCAGCATTCTTACAGTTTTCCTTTGCATTGTGGCAGCTCAGGGGCTTGGACTTGCTATTGGGGCAACACTAATGGACTTGAAAAGGGCAACAACTTTAGCTTCAGTGACTGTGATGACTTTCATGCTGGTTGGAGGTTTCTTTGTGAAGAAAGTCCCTATATTTATATCTTGGATTCGCTACCTATCTTTCAACTACCACACGTACAAACTTTTGCTCAAGGTGCAATATGAACACATAACACCTAGCATAAATGGGATCAGAATTGACAGTGGTTTCAACGAGGTTGCTGCCCTGATAGCCATGGTTTTCGGCTACCGTTTACTCGCATATCTTTCTCTGCGGCGGATGAAACTTCAACCTGGAGCTTAA 2169 0.4283 MDNALSSGISRGKSDELVEAEGGGSSTGSTTLSRKSSRRMSPKNTHIRKARSAQLKVEVDEVSSGVALSRASSASLGLSFSFTGFTLPPDEISDTKPFSDDDIPEDIEAGTHKPKFQTEPTLPLYLKFKDVTYKVVIKGLTTSQEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGARTSQSINDGSITYNDLPYSKFLKSRIGFVTQDDVLFAHLTVKETLTYAARLKLPNTLTREQKEQRALDVIVELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEILINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFKLIGCSPLISMNPAEFLLDLANGNMNDISVPSELKDKVHMGNSEAETCNGKPSAAVVQEYLVEAYETRVAETEKKKLMVPIPLDKDLKSKVCSQKRQWGASWLEQFFILFSRGFKERRHDYFSWLRITQVLSTAIILGLLWWQSDSSNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLAKERASDMYRLSAYFLARTTSDLPLDLVLPVLFLLVVYFMAGLRLSPGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLVGGFFVKKVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIRIDSGFNEVAALIAMVFGYRLLAYLSLRRMKLQPGA* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0609 722 MobiDBLite consensus disorder prediction 1 52 - -
Lja1g0609 722 Pfam ABC transporter 149 300 IPR003439 GO:0005524
Lja1g0609 722 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 24 716 - -
Lja1g0609 722 CDD ABCG_EPDR 123 354 - -
Lja1g0609 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 365 IPR027417 -
Lja1g0609 722 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 126 372 IPR003439 GO:0005524
Lja1g0609 722 MobiDBLite consensus disorder prediction 23 38 - -
Lja1g0609 722 Gene3D - 125 366 IPR027417 -
Lja1g0609 722 Pfam ABC-2 type transporter 467 676 IPR013525 GO:0016020|GO:0140359
Lja1g0609 722 ProSitePatterns ABC transporters family signature. 272 286 IPR017871 GO:0005524
Lja1g0609 722 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 716 - -
Lja1g0609 722 SMART AAA_5 158 349 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0609 Lja-Chr1 5598385 5606750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0609 148 401 Calmodulin-binding Proteins AT2G36910 30.075 5.27e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0609 K05681 - gmx:100796008 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0609 1 5598385 5606750 Lja1g0609 1 5598385 5606750 ECH
Lja1g0609 1 5598385 5606750 Lja5g2384 5 45217444 45226025 PCT