Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0606 ATGCGGAGCTTCAGGATGAGGAACTTGTTGTCCATTGTCAACAACACAAGGACAAAGAAAAACATCAGAAACAACAACAACAAGAAGAAGAAGGTTCCCATCACTAGCAAACACTGCATTCCCATCACCAAACAGTTACCACGCCTCGGAGAAGAAGAAGAAGAAGATGGTGATGATGATGATGCAGAGGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCACGGTGTTCAGCCCTTGGGGAATCTCTACTTCAACCCAGGCTCCACCAACTCCAGGAACACCGGCTTAGGTAATCTCCGGACCCTTACTGATGAGCTTGTTCTCGAGATTCTCGGGTTTTTGGATGCTACTAGCTTGGGTGTTCTGGCTTCTGTTAGCAAGTCTTTTTATGTATTCACCAATCATGAACCCCTTTGGAGGAATCTTGTGTTGGAGAATCTTCTTGGTGGGTTTCAGTTTAATGGGTCTTGGAAATCTACTTATGTTGCTGCTTGCTACCCTTCATTTGATATCTCAGTTTCTGCTCTTGGGGGTTTTAAAGTTAGAGACTTTTATTCGGATTATCTCTTTCAGAGCTGGCTCTGTGCTAATCTTGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTCGAAAAAGGGGCATTTCGGTTGAGGAGTTTGTGTTGAAGTTTGAAGAGCCAAATAAGCCTGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAAAAATTGGGATAGAGATTATTTGGTGGACTTGTGTGGTGATGTTAAGTTTTCGGTTGGGCCAGTGGAGATGAAGCTTGTAGAGTATTTTGGGTACTCGGATCAAGTTAGGGAAGAAAGGCCATTGTATCTGTTTGATCCAAAATTTGCTGAGAAAGTTCCGAAATTTGGTTCTGAATATGAAGTTCCGGTGTATTTTCAGGAGGATTTGTTTGGTGTTTTGGGCAATGATCGACCTGACTACAGGTGGATTATCATGGGACCAGCTGGTTCTGGATCATCTTTCCATGTCGATCCGAATTCGACTTCTGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAGTGGATATTGTTTCCTCCTGATGTGATTCCACCGGGGGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCGATAATGGAATGGTTCATGAACTTCTATGGTGCAACAAAAAGTTGGAAAAAGAGGCCAATTGAGTGCATATGTAAAGCTGGGGAGGTCATCTTTGTGCCTAATGGATGGTGGCATCTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGTTAAATGTCTTGGATTTTCTTAAAAGGCCAAATGCTTGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTCAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAACTGACCCAAAAAGAACATGAGAAAAAGATCCAACAGAAGAAGCTTTCCTACTGGGATTCTGTTACCGATCCCAGCATGGGAGCTTTCAAGTTCTCTTTCTAG 1575 0.4298 MRSFRMRNLLSIVNNTRTKKNIRNNNNKKKKVPITSKHCIPITKQLPRLGEEEEEDGDDDDAEEEGFSIKSSAPSHTHGVQPLGNLYFNPGSTNSRNTGLGNLRTLTDELVLEILGFLDATSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFQFNGSWKSTYVAACYPSFDISVSALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLKFEEPNKPVLLEGCIDNWDALKNWDRDYLVDLCGDVKFSVGPVEMKLVEYFGYSDQVREERPLYLFDPKFAEKVPKFGSEYEVPVYFQEDLFGVLGNDRPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIMEWFMNFYGATKSWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNACTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTQKEHEKKIQQKKLSYWDSVTDPSMGAFKFSF* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0606 524 MobiDBLite consensus disorder prediction 43 88 - -
Lja1g0606 524 Pfam Cupin-like domain 224 442 IPR041667 -
Lja1g0606 524 Gene3D Cupin 193 444 - -
Lja1g0606 524 SMART fbox_2 106 146 IPR001810 GO:0005515
Lja1g0606 524 Gene3D - 94 171 - -
Lja1g0606 524 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 69 522 - -
Lja1g0606 524 SUPERFAMILY Clavaminate synthase-like 216 457 - -
Lja1g0606 524 SMART cupin_9 290 459 IPR003347 -
Lja1g0606 524 Pfam F-box-like 108 148 IPR001810 GO:0005515
Lja1g0606 524 SUPERFAMILY F-box domain 97 169 IPR036047 GO:0005515
Lja1g0606 524 ProSiteProfiles F-box domain profile. 100 146 IPR001810 GO:0005515
Lja1g0606 524 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 69 522 - -
Lja1g0606 524 ProSiteProfiles JmjC domain profile. 299 459 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0606 Lja-Chr1 5581091 5584121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0606 91 448 Glycosyltransferase AT1G78280 37.398 1.43e-74 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja1g0606 Cupin_8 6.1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0606 - - lja:Lj1g3v4753250.1 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0606 1 5581091 5584121 Lja1g0606 1 5581091 5584121 ECH