Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0593 ATGGCTGAAACCGTCGCTGTCGAAGTTGATCCCTCCCAAATCGAGGTCAAGCTCTTCAACAGGTGGAGCTACGACGATGTTCAGGTTACTGACATATCTTTGGCTGATTACGTCGGAGTGGTGGCATCGAAGCACGCAACATATGTTCCTCACACTGCTGGTAGGTACTCTGTCAAGCGTTTCAGGAAGGCCCAGTGTCCTATCATTGAGAGGCTCACCAACTCTCTCATGATGCACGGGAGAAACAATGGAAAGAAATTGATGGCTGTCAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCTGACTGACCTCAACCCAATTCAAGTTATCGTCGATGCTGTCATCAACAGTGGTCCTCGTGAAGATGCAACCCGAATTGGGTCTGCTGGAGTTGTTAGGCGTCAAGCTGTTGATATTTCTCCCCTTCGCCGTGTTAACCAGGCTATCTACCTCCTAACAACAGGTGCACGTGAAGCGGCTTTTAGAAACATAAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAAGGTTCATCCAACAGCTATGCTATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAATCGTTAA 615 0.4667 MAETVAVEVDPSQIEVKLFNRWSYDDVQVTDISLADYVGVVASKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0593 204 Gene3D Ribosomal protein S7 domain 1 204 IPR036823 -
Lja1g0593 204 PANTHER RIBOSOMAL PROTEIN S7 3 204 IPR000235 GO:0006412
Lja1g0593 204 Pfam Ribosomal protein S7p/S5e 58 204 IPR023798 -
Lja1g0593 204 PANTHER 40S RIBOSOMAL PROTEIN S5 3 204 - -
Lja1g0593 204 SUPERFAMILY Ribosomal protein S7 17 204 IPR036823 -
Lja1g0593 204 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 204 IPR000235 GO:0006412
Lja1g0593 204 ProSitePatterns Ribosomal protein S7 signature. 70 96 IPR020606 GO:0003723|GO:0003735|GO:0006412
Lja1g0593 204 CDD uS7_Eukaryote 17 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
Lja1g0593 204 TIGRFAM uS7_euk_arch: ribosomal protein uS7 15 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0593 Lja-Chr1 5412955 5415852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0593 15 204 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.632 2.61e-135 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0593 K02989 - gmx:100815850 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0593 1 5412955 5415852 Lja1g0593 1 5412955 5415852 ECH