Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0592 ATGGCTTCAAGATTCTGGACCCAGGGCGGTAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACTGTGGCCGGTGAAACTGCTGGTCAAGAGGTTCAAAGCAGGTATTTGAAAGAGAATGAAAGTGACAGTGATGACTCTGATGGCCAGAAGCGTGTCGTCAGGTCGGCCAAAGATAAGCGATTTGAGGAGATGGCGGCCACTGTCGACCAAATGAAGAATGCCATGAAGATCAATGACTGGGTCAGCCTGCAAGAGAGCTTTGACAAGATCAACAAGCAGCTTGAGAAGGTTATGCGCGTCACTGAGTCTGAAAAGGTGCCCAAGCTTTACATCAAGGCACTTGTGATGCTGGAGGATTTCCTTGCTCAGGCTTTGGCGAATAAGGATGCTAAGAAGAAGATGAGTAGCAGCAATGCCAAGGCGCTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAGTATGAGGAAATGATTACTAAGCAAAGGGAGAGTCCGGAGAGTGAGGAGGAAAAAGAGGAAGAGGAGTCTGAGGATGAATATGAAAGTGATGGTGAGATTATTGAGCCCGAGCAGCTTAGGAAAAGGGAGCCACAGTCGGATTCAGAAGCTTCTCAATATGATGATGAGAAGCAAGATGATGGCGACGGACCCTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTCTGGATAGACAGTTCATGAAAGACCCTAGTGAGATCACCTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGCAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCGAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAATCCAGGCCTCAATGGGCATATGCCCATAAATGTGTGGAAGAAATGTGTTCACAATATGCTGATCATTCTGGATGTTCTAGTACAGTATCCAAACATAATGGTTGATGATTCAGTGGAGCTAGATGAGGCTGAAACTCAGAAAGGGTCTGACTATGATGGGCCTATTCGGGTTTGGGGTAACTTAGTTGCTTTCCTAGAAAGAATAGATGCCGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCATACGCGTGAGTATGTTGAGAGACTCAGGGATGAACCCTTGTTTTTGGTTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGACTGGCGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAAGGGGTTTATGATGCTATGAGGAAATTGGTTGAGCTGACAGAAGAGGGAGATAATGGAGGGGAGACTGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATTCCTAGTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGGAAACCCACTTTTCATGAGGATAGCAGGTCTCTAATGGATGCATTAGTATCTGTGATATACAAATACGGAGAGGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGGTCTTCGTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCATTTACAGGATAATGTTCAGCATATGGACATTTCAACGCAGATTCTTTTTAACAGAGCTATGTCACAATTAGGTCTATGTGCTTTTCGGGTTGGTCTGATTTCCGAAGCACATGGCTGCTTATCTGAACTTTATTCTGGTGGGAGGGTGAAAGAGTTGCTTGCGCAAGGCGTGTCACAAAGTCGTTATCATGAGAAAACCCCTGAACAGGAGAGGTTGGAAAGAAGACGTCAAATGCCATATCATATGCATATAAATCTCGAGCTTTTGGAGGCAGTTCATCTTATATCTGCTATGCTTCTAGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAGGTCATCAGTAAGACATTTCGTCGCCTGCTTGAGGTCAATGATAAGCAAACCTTTGTCGGTCCACCTGAGAATGTAAGAGATCACGTCATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTACAACAAGGCTTTTGAAATTATTGTCTCTCTTGATGTCTGGAAATTTGTGAAAAATCGAGACACCGTGCTTGAAATGCTAAAGGACAAAATCAAGGAGGAGGCACTCAGGACTTATCTGTTCACCTTCTCCTCATCATATGATTCTTTGAGTGTGGACCAACTCACCAAAATTTTCGACCTCTCTGTTCCCCGAATTCATAGCATTGTCAGTAAGATGATGGTCAACGAGGAGCTTCATGCAAGCTGGGACCAGCCATCTGGGTGTATTGTTTTCCAAAATGTCGAGCTCTCTAGGTTGCAGGCATTGACGTTCCAATTGACTGAGAAATTGTCTATCTTTGCAGAGAGTAACGAAAGAGCTGCAGAGGCAAGGATTGGTGGTGGTGGATTGGATCTGCCTCCAAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGAGGTGGTGGAGCAGGTGGAAGGTGGCAAGATTTGTCCCTTTCTCAGCCTAGGCAAGGCAGTGGGCGTGCAGGTTATGGTAGTGGTGGTGGAAGGCCATTTGCATTCAATCAGGCAGCAGGTGGCTATTCAAGGGATCGAACGGGACGAGGAGGCGGTGGTGGGGGTGGTTATCAGAGTCAATATGGAGGTTCAGGGAGGGCTCATCAGGGAGGTTCAGCATTGAGGGGACACCATGGCGATGGATCTTCTCGCATGGTTAGCCTCAAGGGAGCTCGTGCTTAA 2814 0.4634 MASRFWTQGGSDSEEEESDYDEEVETVAGETAGQEVQSRYLKENESDSDDSDGQKRVVRSAKDKRFEEMAATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPKLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEEMITKQRESPESEEEKEEEESEDEYESDGEIIEPEQLRKREPQSDSEASQYDDEKQDDGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVHNMLIILDVLVQYPNIMVDDSVELDEAETQKGSDYDGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQEYLERTGDFKAASKVALRRVELVYYKPQGVYDAMRKLVELTEEGDNGGETEESKGFEETRIPSAFVATPELVARKPTFHEDSRSLMDALVSVIYKYGEERTKARAMLCDIYHHGLRDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHVMAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQLTEKLSIFAESNERAAEARIGGGGLDLPPRRRDGQDYAAAAAGGGGGAGGRWQDLSLSQPRQGSGRAGYGSGGGRPFAFNQAAGGYSRDRTGRGGGGGGGYQSQYGGSGRAHQGGSALRGHHGDGSSRMVSLKGARA* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0592 937 MobiDBLite consensus disorder prediction 820 937 - -
Lja1g0592 937 MobiDBLite consensus disorder prediction 1 62 - -
Lja1g0592 937 MobiDBLite consensus disorder prediction 12 28 - -
Lja1g0592 937 SUPERFAMILY "Winged helix" DNA-binding domain 715 789 IPR036390 -
Lja1g0592 937 MobiDBLite consensus disorder prediction 193 231 - -
Lja1g0592 937 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 933 - -
Lja1g0592 937 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 868 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g0592 937 Pfam PCI domain 659 787 IPR000717 -
Lja1g0592 937 Gene3D - 726 794 IPR036388 -
Lja1g0592 937 MobiDBLite consensus disorder prediction 134 231 - -
Lja1g0592 937 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Lja1g0592 937 MobiDBLite consensus disorder prediction 135 154 - -
Lja1g0592 937 MobiDBLite consensus disorder prediction 155 174 - -
Lja1g0592 937 MobiDBLite consensus disorder prediction 40 62 - -
Lja1g0592 937 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 806 - -
Lja1g0592 937 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 42 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g0592 937 Coils Coil 144 171 - -
Lja1g0592 937 MobiDBLite consensus disorder prediction 175 192 - -
Lja1g0592 937 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 933 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g0592 937 SMART PINT_4 720 806 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0592 Lja-Chr1 5404328 5408889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0592 1 937 Eukaryotic Initiation Factors Gene Family AT3G56150 67.838 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0592 K03252 - gmx:100781967 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0592 1 5404328 5408889 Lja1g0592 1 5404328 5408889 ECH