Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0590 ATGTCGATATCATCAAGCATGGATTTGCCTACCATTGATGTGGACCTTGGGCCTAGGAAGATTGAGGATGAGAGAGAGGGAGGTCCCTTGTTCCATTGTGATCTTTGTGATACAGAGGTAGTTCACAAGCTGGCTCAAATGTTCCTTCCGGGACTAGCCTCCGCTTGTGTTGATAACACCTCAGGAGACCTCTTCAAGACTCCCGGGTTGGTGGCTAATGATTTGAGAAAGGAAATGATAGATTATCTTACCCTGAGAAGCGAATCGTTTGTTGCCGAGTCTGTTATCTTGGAAGGGGGCCCGGACGGTGAAGAATCGGATCATCCTTTTGATATCATTTCAAATTTCGTTGATGACTTTGTGAGTTTAAAGAGGAATTTGTTTAGCCGGGTTTCGGGATGGTTGCTGAGTGAGAAGAGAGAGGACAAGATAGACGATTTTGTTCAGGAGATGGAAATGAAAGGCTTTTGGACACTTGATAGAAGGGAAACCATTGCAGAAACTTTGCTTAAGAATGTGGACTTTGAGAACTCGTTTCATTGCAGCATGAATTTTAACTCTAAGGAAGAGCTTGCCAGTCATGTTACTGGCTGCAACTTTAGAACCATGATTTGCCAAAATGAGGGGTGCAATTCAAGATTTTGTGCAGGTCATTTGAAGAAGCATGATTCAACATGTCCTTTCAAGATAATTCAATGTGAACAGAAATGTTCAGATAACATCATGAGACGGGATATGGACAGGCACTGTATAACTGTTTGTCCAATGAAGCTTGTAAATTGTCCTTTCTTTGCAGTGGGTTGCCGATCAGCGGTTGCGCAATGTATGATCGAAAAACATTTTTCGGATGATATTCGTTCTCACTTGTGGCACTTGCTTAAAGGCATCCACAAGGAAGCATCTGGGGAAGATCTTAAACGACGAGTGGACCAAATTGTAGAGGCATCATCAAGCAGCCAATTAGCAAAGGCTCGAGATGTTAGATCTTTAACCTTCGTTGTCAAGGATATTGAAGCTAAGCTAGGGCCTTTGGAAGTGAGTGTTGTGGAGAAAAATAATGCAGAGATTTCCCCAAAAAGTGATGATGATGGGGAAGACAGTGACACCAATACAAATGTCACTGAACAGAGCACACAAGCTTCTCATATCACTAATTCATCAGATACGGCTCAAGGGAGCGACATTGTAAATACGCATAATGCGGAGAATACTACTAAGAATGAAGATAGTGAACACAGGCGTGTTGAAAACAAGAGCAATGAAGAGAAGACACAGACTTCAAATGAACTACCTGATAAAGTTAAAAATGATGTTGTAAAGGAAGACAGTGCAGAGATTTACAAGGACATTAAAGATGTTGCAGCTAGTGAATTAAAAACCGCAGGCAATGAAGAGAACACTATGGACAATTCATCTGAAAAAATCAGAGTCACAGATGATGACAGTCCAAAGAATAGCATAAAAAACAGATCTATTGAAGGTAGTAACTTCAAAGATAAGGATAATGAACAAAGCATACAAGATATGAAAATAGAAACTCAGGGTAGTGCAGAGAATAATGTCAAGAACAAGAATGTTGAAGATGATAACTTAAAAGAGAACACAGAAACTTTAAAAGTGTAA 1623 0.4036 MSISSSMDLPTIDVDLGPRKIEDEREGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGLVANDLRKEMIDYLTLRSESFVAESVILEGGPDGEESDHPFDIISNFVDDFVSLKRNLFSRVSGWLLSEKREDKIDDFVQEMEMKGFWTLDRRETIAETLLKNVDFENSFHCSMNFNSKEELASHVTGCNFRTMICQNEGCNSRFCAGHLKKHDSTCPFKIIQCEQKCSDNIMRRDMDRHCITVCPMKLVNCPFFAVGCRSAVAQCMIEKHFSDDIRSHLWHLLKGIHKEASGEDLKRRVDQIVEASSSSQLAKARDVRSLTFVVKDIEAKLGPLEVSVVEKNNAEISPKSDDDGEDSDTNTNVTEQSTQASHITNSSDTAQGSDIVNTHNAENTTKNEDSEHRRVENKSNEEKTQTSNELPDKVKNDVVKEDSAEIYKDIKDVAASELKTAGNEENTMDNSSEKIRVTDDDSPKNSIKNRSIEGSNFKDKDNEQSIQDMKIETQGSAENNVKNKNVEDDNLKENTETLKV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0590 540 MobiDBLite consensus disorder prediction 370 403 - -
Lja1g0590 540 MobiDBLite consensus disorder prediction 404 437 - -
Lja1g0590 540 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Lja1g0590 540 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Lja1g0590 540 MobiDBLite consensus disorder prediction 469 507 - -
Lja1g0590 540 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 431 IPR043211 -
Lja1g0590 540 MobiDBLite consensus disorder prediction 458 540 - -
Lja1g0590 540 MobiDBLite consensus disorder prediction 352 437 - -
Lja1g0590 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 285 IPR013083 -
Lja1g0590 540 MobiDBLite consensus disorder prediction 522 540 - -
Lja1g0590 540 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0590 Lja-Chr1 5387390 5390132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0590 - - gmx:100799182 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0590 1 5387390 5390132 Lja1g0590 1 5387390 5390132 ECH
Lja1g0590 1 5387390 5390132 Lja5g2347 5 43424723 43429090 PCT