Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0583 ATGCCTGCCGGTCACGGTCTTAGATCTCGCACCAGAGACTCCTTCTCTCGCCCCTTCAGGAAGAAGGGAACCATCCCCCTCACCACCTACCTCCGTACGTACCGCATCGGCGACTACGTCGACGTCAGAGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCATGGCCGCACCGGTCGTGTCTGGAATGTCACCAAGCGCGCCATCGGCGTCGAGGTCAACAAGCAGGTGGGAAACCGGATTATCAGGAAGAGAATTCATGTGCGTGTGGAGCATGTGATGCCATCCCGTTGCACTGAGGAGTTCCGTCTCAGGAAGGTTAAGAATGATCAGCTGAAGGCCGAGGCTAAGGCCAAGGGTGAGGTGATCAGCACCAAGAGGCAGCCTGCTGGGCCCAAACCAGGTTTCATGGTTGAAGGCGCCACATTGGAGACTGTCACTCCTATTCCATATGATGTGGTTAATGACCTCAAAGGGGGCTACTAG 495 0.5596 MPAGHGLRSRTRDSFSRPFRKKGTIPLTTYLRTYRIGDYVDVRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPAGPKPGFMVEGATLETVTPIPYDVVNDLKGGY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0583 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Lja1g0583 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lja1g0583 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Lja1g0583 164 Gene3D - 99 156 - -
Lja1g0583 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Lja1g0583 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Lja1g0583 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0583 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 84.756 2.27e-106 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0583 K02889 - gmx:100305629 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0583 1 5308375 5309897 Lja1g0583 1 5308375 5309897 ECH