Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0577 ATGGCGGATGCGAAGGAAGAGAGTAGTAAATCTAGCACCGGCGGTGGCGGTGGCGAGGAAGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGATGAACTGCTCACAATGTTCAAGGAGTTCGCCTTGGTCGATGAAGTCAACATCATCAAGGATAAAGCCACACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGAGATGAAGCTGATAAGGCAGTCAATGCGTGTCACAACAAGAAAACGCTACCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAGCTCTTCATTGGCATGCTTCCAAAAAATGTTTCTGAAGTTGAAGTATCCGCACTTTTCTCCAATTATGGAACTATAAAAGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGATCTAGTGTTCCTTTAGTTGTAAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCGCAGTCCCAAGCTTCTAATGTACCTCATGCTGATTCTCAGCACCCCTCATTGTTCGGAGCCATGCCTATGGGTTATGTTCCTCCTTATAACGGATATGGTTATCAGGCTCCTGGCAGTTATGGGCTCATGCCATACCGGATGCCACCAATGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCACGGGAATGCATTGCGGCCCGATCTTGGTCCTAGTATGAACCCTAGAAATTATCATGTGCCCCCGGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCGTATCATGCAGGAATGATTAGTCCAAGGCCTATGAGTAGTCCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAGCAACTCTGGTACACCTTCAGGACCAAGTAAAAATTCCGGGGGTCAAGTTGAAGGTCCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTCGGAGATCAAGATCTTGCCAATGCTTTTCAACCATTTGGTAGAGTTATAAGCGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGTAAATGTTTTGGGTTTGTTAGCTATGATTCACCAGAAGCTGCTCAATCCGCCATTAGTATGATGAATGGATATCAACTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCGGGTAAACCTTACTGA 1323 0.4444 MADAKEESSKSSTGGGGGEEEESVKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPMQNQPGFHNMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAYHAGMISPRPMSSPPGSVSPAGGNSNSGTPSGPSKNSGGQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0577 440 Gene3D - 327 432 IPR012677 -
Lja1g0577 440 MobiDBLite consensus disorder prediction 325 346 - -
Lja1g0577 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 90 IPR000504 GO:0003723
Lja1g0577 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 427 IPR000504 GO:0003723
Lja1g0577 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 177 IPR000504 GO:0003723
Lja1g0577 440 MobiDBLite consensus disorder prediction 202 216 - -
Lja1g0577 440 Gene3D - 16 108 IPR012677 -
Lja1g0577 440 CDD RRM1_2_CELF1-6_like 25 101 - -
Lja1g0577 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 192 IPR000504 GO:0003723
Lja1g0577 440 MobiDBLite consensus disorder prediction 312 354 - -
Lja1g0577 440 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 18 427 - -
Lja1g0577 440 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g0577 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 105 IPR000504 GO:0003723
Lja1g0577 440 PANTHER RNA BINDING PROTEIN 18 427 - -
Lja1g0577 440 MobiDBLite consensus disorder prediction 194 217 - -
Lja1g0577 440 CDD RRM3_CELF1-6 357 429 - -
Lja1g0577 440 SMART rrm1_1 25 101 IPR000504 GO:0003723
Lja1g0577 440 SMART rrm1_1 113 188 IPR000504 GO:0003723
Lja1g0577 440 SMART rrm1_1 356 429 IPR000504 GO:0003723
Lja1g0577 440 CDD RRM1_2_CELF1-6_like 113 188 - -
Lja1g0577 440 SUPERFAMILY RNA-binding domain, RBD 16 107 IPR035979 GO:0003676
Lja1g0577 440 Gene3D - 109 201 IPR012677 -
Lja1g0577 440 SUPERFAMILY RNA-binding domain, RBD 112 435 IPR035979 GO:0003676
Lja1g0577 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 433 IPR000504 GO:0003723
Lja1g0577 440 PRINTS Paraneoplastic encephalomyelitis antigen family signature 132 144 IPR002343 GO:0003723|GO:1990904
Lja1g0577 440 PRINTS Paraneoplastic encephalomyelitis antigen family signature 173 190 IPR002343 GO:0003723|GO:1990904
Lja1g0577 440 PRINTS Paraneoplastic encephalomyelitis antigen family signature 24 39 IPR002343 GO:0003723|GO:1990904
Lja1g0577 440 PRINTS Paraneoplastic encephalomyelitis antigen family signature 117 132 IPR002343 GO:0003723|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0577 Lja-Chr1 5253972 5258967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0577 355 428 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 2.49e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0577 K13207 - gmx:100813239 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0577 1 5253972 5258967 Lja1g0577 1 5253972 5258967 ECH