Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0571 ATGAATAGTACTATACACGCCTTACACGCCCTTTTTAAATCTCATTTTTCTTCTTCTCTGTGCGTGAAAGATGATTTGTGTGCTGAACTGTGGTATGCATGTGCCGGGCCTGTGTATGTTCCTCGCGCTGGGGAGAAGGTTTTCTACTACCCACAGGGTCACTTGGAGCAGGTTGCTGCATTTACTCAACATCAGCAAGATGGCCACATGGAAATTCCTGTATATGATTTGCCTTCTAAGATCTTATGCAGAGTTATCTGCGTTCATTTAAAGGCTGAAGATTACACAGATGAGGTTTTTGCTCAAGTGACATTACTTCCAGAGCTCATGCAAGATGAACTTAATTCAGAGGACGGAGGCACTTGTCACATACCTTGTAGAACCAAAACCCACTCTTTTAGCAAGATACTCACTCCATCAGACACCAGCACACATGGTGGATTCTCAATTCCCAAACGACTGGCAGATGAATGCTTCCGTCCTCTGGACATGACTCATCAGCCACCAACACAAGAGCTGGTTGCTAAGGACTTGCATGGGTTTGAATGGCATTTTCGGCACATATTTAGAGGCCAGCCAAAACGACACTTGATTACTAGCGGTTGGAGCACATTTGTCAATTCAAAGAAACTTGTTGCTGGAGACTCATGCATTTTTGTTAGTGGGGACAATGGAGAAATTCGTATAGGGTTTCGTCGAGCTATGAAGCAACACAGCTATGCATCCACATCTTCATCTCTGATATCAGGTCATAGCATGCAACTTGGAATATTGGCTAGTGCTTCCCATGCTATTGCTACAGGATCCTTGTTCACTGTCTATTACCATCCATGGACATATCCCTTTGAATTTATTACTCCAGTGAAAAACTACATGAAGTCAACTGAAACCGACTATGCAATTGGAACAAGAGTACAAATGGTGTTTGAAGCTAAAGAATGTGCAAGAAGAAATGCAGGTACGATAATTGGGAATGAAGATATCGATAACATTAAGTGGCCTGGTTCAGAATGGAGATGTCTGAAGGTGAAATGGGATGCCATGCCCATACTAGATACATATAGGCATCCTGAAAGGGTTTGTCCATGGTGGATTGAGCCCTTGGACTCCATCAAGAAGAAGCGCGCGCCAATGCTCTCCCTGGCAAACAAGAGATGTGTACTTAACCTGCCTCAGAATTCAGTCAAGTCTGCATCTCAGAGAGTGGATAGGGACTTACAAGGTCAAGATTACAATGGCGTACATTCTCTACAGCCTTTGCAAAGTCCACCATCAACAGATTTGCTCCTCTCATTGAAGATCACCAACTTCAGGACGGAGAAACCTAATCAGCTTCCCTTTCTCATGCAAGAACCTCTGCATCAATCTCTTGGAAGCTCGATGTCATTTCCACATGAAGACATATCAACTTCATGCTCAAATGTGAATTCCACAGGTTCTGAATCCCAGGGATGGCCATCTTCCGAGTCTAAAGATGAAAATGATGTTCCTTTCAGCCTACCTGGAAGCTGTGGTAAATACAAGCTTTTTGGGGTTAGCTTACTTGATAGGCAACCGGAGCTCCCTTCACAACAATTTGCTATTTTTAGCAAAATTTCTAGTCCTCCAATGTGTGTTACCTCAAGGAAAACATGGAAGAAGTGTCGCTCTGTTAACAGTAGGAGTTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCGGTTGACCTCACATGTTTTCCTGGATATGATGAACTCATTTCTGAACTTGACCAGATGTTTGATTTCGGTGGAAGCTTAATCAATGGAAGCAGTGGGTGGCATGTGACCTGCATAGATGATGATGGAGATATGATGCTACTAGGGGATTACCCTTGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATCATATGTCCCAGGGATGGGATGAAGAATTTCAATCCAAGCTCCTCAGCAGAACCTACAAGCCTTTAA 1962 0.4368 MNSTIHALHALFKSHFSSSLCVKDDLCAELWYACAGPVYVPRAGEKVFYYPQGHLEQVAAFTQHQQDGHMEIPVYDLPSKILCRVICVHLKAEDYTDEVFAQVTLLPELMQDELNSEDGGTCHIPCRTKTHSFSKILTPSDTSTHGGFSIPKRLADECFRPLDMTHQPPTQELVAKDLHGFEWHFRHIFRGQPKRHLITSGWSTFVNSKKLVAGDSCIFVSGDNGEIRIGFRRAMKQHSYASTSSSLISGHSMQLGILASASHAIATGSLFTVYYHPWTYPFEFITPVKNYMKSTETDYAIGTRVQMVFEAKECARRNAGTIIGNEDIDNIKWPGSEWRCLKVKWDAMPILDTYRHPERVCPWWIEPLDSIKKKRAPMLSLANKRCVLNLPQNSVKSASQRVDRDLQGQDYNGVHSLQPLQSPPSTDLLLSLKITNFRTEKPNQLPFLMQEPLHQSLGSSMSFPHEDISTSCSNVNSTGSESQGWPSSESKDENDVPFSLPGSCGKYKLFGVSLLDRQPELPSQQFAIFSKISSPPMCVTSRKTWKKCRSVNSRSCTKVLKLGTALGRAVDLTCFPGYDELISELDQMFDFGGSLINGSSGWHVTCIDDDGDMMLLGDYPWQDFQSMVQKMIICPRDGMKNFNPSSSAEPTSL* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0571 653 MobiDBLite consensus disorder prediction 466 494 - -
Lja1g0571 653 CDD B3_DNA 131 233 IPR003340 GO:0003677
Lja1g0571 653 Gene3D - 130 235 IPR015300 -
Lja1g0571 653 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 647 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g0571 653 SMART B3_2 133 235 IPR003340 GO:0003677
Lja1g0571 653 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Lja1g0571 653 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Lja1g0571 653 Pfam Auxin response factor 261 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g0571 653 Pfam AUX/IAA family 595 633 IPR033389 -
Lja1g0571 653 MobiDBLite consensus disorder prediction 466 496 - -
Lja1g0571 653 Gene3D - 298 374 - -
Lja1g0571 653 PANTHER AUXIN RESPONSE FACTOR 19 647 - -
Lja1g0571 653 ProSiteProfiles PB1 domain profile. 554 636 IPR000270 GO:0005515
Lja1g0571 653 Gene3D - 550 642 - -
Lja1g0571 653 SUPERFAMILY DNA-binding pseudobarrel domain 127 264 IPR015300 -
Lja1g0571 653 SUPERFAMILY CAD & PB1 domains 558 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0571 Lja-Chr1 5204660 5212585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0571 547 646 B3 DNA Binding Superfamily AT5G62000 45.000 9.63e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g0571 B3 1.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0571 - - lja:Lj1g3v4764520.2 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0571 1 5204660 5212585 Lja1g0571 1 5204660 5212585 ECH