Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0561 ATGGGTGGTTCTCCGAGAAACCCACAACCAAAAGATGAAGAAGAAGCACCACAGCTTGTGCGACCCTGTGACTACTGTGGTCACTCCACAGCAGTTCTCTACTGCAGAGCTGATTCAGCGAAGCTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAGCTTTTCTCAAAGCACACTCGCACTCTCCTCTGTGATGCCTGCGATGATTCCCCTGCCACCATACTCTGTTCCACAGACTCCTCTGTTTTCTGCCAGAATTGTGACTGGGAGAAACACAACCCTTCGCTTTCTTCTGTGCACGAACGGAGGCCCCTTGAAGGGTTCACGGGGTGCCCTTCGGTTACTGAGCTCTTGTCGATTATGGGGTTTCAGGATTTGGGGAAGAAAGAGCTTTTTGATTCGAGTGGTGTTGCTGGGAAAACAGAGGATGGGTTTCTGGGGTGTGAGATTGAAGGGCTTTCTGATTTGTTCGTTTGGGATACTCCTTCTGTTTTTAGTCTTGATGATTTGATTTCTTCTTCTGGTTCTTCTCATAACTTTCAGGCTATGGAGGTTCCTCCTCTACCCAAGAATCGTAAGGCTGCATGCGGGCGACACAAAGAAGAGATTCTTAACCAGCTTCGCCAACTAACAAAGTCTGAGCCCTTGGATCTTGAGCAGTATGTGCCAACAGAAAATCTGTCCACAGGTTTTGAAGGTGAAATGGAGGCTGATATCTTTTCTTCCCATGAGTGGCATAGAGAAAGCAATGAGACTATGTATCAAGTTGTTCCTCTTGAATCGTCTTTGAGAACTTCTAACGAAGAAGTTTCAGTTAAACATTCTACTTCTGCTGGTGGGGAGGCTCATGCCTATGGCAATAATGAAGGTCAACCTTCAAATTCTATCAAGTCTGAAACCTTACCAACCACTCCTAGACCTGTGCCATATGAGTTAGCGAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACATAAGGTATGAATCACGAAAAGCTCGGGCAGAAAGCAGGATAAGAATTAGGGGCCGATTTGCCAAAATGGAACACTGA 1092 0.4579 MGGSPRNPQPKDEEEAPQLVRPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDSSVFCQNCDWEKHNPSLSSVHERRPLEGFTGCPSVTELLSIMGFQDLGKKELFDSSGVAGKTEDGFLGCEIEGLSDLFVWDTPSVFSLDDLISSSGSSHNFQAMEVPPLPKNRKAACGRHKEEILNQLRQLTKSEPLDLEQYVPTENLSTGFEGEMEADIFSSHEWHRESNETMYQVVPLESSLRTSNEEVSVKHSTSAGGEAHAYGNNEGQPSNSIKSETLPTTPRPVPYELASQERDSALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAKMEH* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0561 363 CDD Bbox1_BBX-like 22 65 - -
Lja1g0561 363 ProSiteProfiles CCT domain profile. 319 361 IPR010402 GO:0005515
Lja1g0561 363 Pfam CCT motif 319 361 IPR010402 GO:0005515
Lja1g0561 363 Pfam B-box zinc finger 21 63 IPR000315 GO:0008270
Lja1g0561 363 Pfam B-box zinc finger 65 107 IPR000315 GO:0008270
Lja1g0561 363 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Lja1g0561 363 Coils Coil 361 363 - -
Lja1g0561 363 CDD Bbox1_BBX-like 65 107 - -
Lja1g0561 363 MobiDBLite consensus disorder prediction 275 307 - -
Lja1g0561 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 20 363 - -
Lja1g0561 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 363 - -
Lja1g0561 363 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Lja1g0561 363 MobiDBLite consensus disorder prediction 289 304 - -
Lja1g0561 363 SMART bboxneu5 66 107 IPR000315 GO:0008270
Lja1g0561 363 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0561 Lja-Chr1 5095904 5099863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0561 14 334 C2C2-CO-like Transcription Factor Family AT2G47890 42.249 1.88e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja1g0561 CCT 1.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0561 - - gmx:100817838 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0561 1 5095904 5099863 Lja1g0561 1 5095904 5099863 ECH