Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0559 ATGGGGCACTTATCCTCTTTGTTTAATGGCCTGGCAAAGTCGTTTTCAATGAAGAAAGGAAGAGGTTCTGGCAGATGTGGAGGGAGAGAAGCTGCTGAAGCTATGGCAAAGGAAGCTAAGAAAAATGACTTGATATTGCGTACCTCCGGCACCGTTAATGCAGATGGTTCAAACAACTTCGCCTCCGTTTTCTCTAAAAAAGGCCAGAAAGGAGTCAACCAGGATTGTTGCATAGTGTGGGAGGAATTCGGGTGCCAAGAGGATATGATCTTCTGCGGGATCTTTGATGGACACGGGCCATGGGGTCACTTTGTGGCCAAAAGAGTAAGGGAATCAATGCCACCATCTTTGCTATGCAAATGGCAGGAAACACTTGCCCAAACTTCACTTGATCAAGATATTGATATAGAGGATGAGAAGAAAAAACACCACCACAGGTTCAATATATGGAAGCATTCTTACCTGAAGACATGTGCTGCCATTGATCAAGAACTAGAGAAGTATCGAAAGATAGACTCGTTTTACAGTGGAACAACTGCCCTATCAATTGTTAGACAGGGTGAATTCATTGTGATAGCAAATGTTGGTGACTCTCGTGCTGTATTAGCTACAAAATCAGATGATGGAAGTTTGGTCCCAGTTCAGCTAACAATTGATTTCAAGCCCAACTTACCCCAAGAAGAAGAGAGAATAATTCAGTGCCAGGGGAGAGTGTTCTGCTTACACGATGAGCCCGGGGTGCCCCGGGTGTGGTTGCCGGATGGAGAGTCTCCAGGACTCGCCATGTCTCGAGCTTTTGGTGACTATTGTATTAAAGAATATGGTCTTATTTCAGTGCCTGAGGTAACACACAGAAGCATAGGCAGCAAAGATCAGTTTGTTGTGCTTGCCACTGATGGGGTTTGGGATGTAATCTCCAATCAAGAAGCAGTAGATATTGTGTCTTCAACACCAAACAAAGCAAAATCAGCTAAGCGTTTGGTGGAATGTGCAGCGCATGCATGGAAACGCAAGAGGAGGGGCATTGCCATTGATGATATTTCAGCTATTTGTCTCTTCTTTCACTCAGAACAAGTTAGCCATGTTACCACCCTAAAATAG 1101 0.445 MGHLSSLFNGLAKSFSMKKGRGSGRCGGREAAEAMAKEAKKNDLILRTSGTVNADGSNNFASVFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPSLLCKWQETLAQTSLDQDIDIEDEKKKHHHRFNIWKHSYLKTCAAIDQELEKYRKIDSFYSGTTALSIVRQGEFIVIANVGDSRAVLATKSDDGSLVPVQLTIDFKPNLPQEEERIIQCQGRVFCLHDEPGVPRVWLPDGESPGLAMSRAFGDYCIKEYGLISVPEVTHRSIGSKDQFVVLATDGVWDVISNQEAVDIVSSTPNKAKSAKRLVECAAHAWKRKRRGIAIDDISAICLFFHSEQVSHVTTLK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0559 366 SUPERFAMILY PP2C-like 58 355 IPR036457 -
Lja1g0559 366 PANTHER ALPHABET, ISOFORM E-RELATED 1 359 - -
Lja1g0559 366 SMART PP2C_4 51 352 IPR001932 -
Lja1g0559 366 ProSiteProfiles PPM-type phosphatase domain profile. 60 354 IPR001932 -
Lja1g0559 366 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 359 - -
Lja1g0559 366 CDD PP2Cc 59 354 IPR001932 -
Lja1g0559 366 Pfam Protein phosphatase 2C 81 327 IPR001932 -
Lja1g0559 366 Gene3D - 49 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0559 Lja-Chr1 5078411 5082146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0559 1 355 PP2C-type Phosphatase Gene Family AT3G05640 72.269 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0559 - - gmx:100808955 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0559 1 5078411 5082146 Lja1g0559 1 5078411 5082146 ECH
Lja1g0559 1 5078411 5082146 Lja5g1407 5 14075030 14078230 PCT