Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0557 ATGATGAACAAGAGTGAATTGTCGTCCACGAGGATGAAGCCGCCACCAGTTCCATTGGCTACTCTGATTGGCCGTGAGCTTCGACATGAAAAAGTTGAGAAACCTTTTGTCAAGTATGGCCAAGCTGGCTTGGCTAAGAAAGGAGAAGATTACTTTCTCATCAGGACAGATTGTCACAGGGTTCCTGGGGATCCATCAACCGCGTTTTCGGTCTTCGCGATATTTGATGGGCATAATGGTATATCAGCTGCTATTTTCGCAAAGGAAAACTTGCTAAGTAATGTTTTGAGTGCAATACCACAAGATATCAGCAGGGATGCGTGGCTGCAGGCCCTTCCTCGTGCTCTAGTTGTTGGCTTTGTGAAAACTGACACAGAGCTTCAACAAAAGGGGGAAACCTCGGGAACTACAGCTACATTTGTTCTAGTTGATGGATGGACTGTCACAGTTGCATCTGTTGGAGATTCTCGTTGCATATTAGACACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGATCACAGACTGGAAGAGAATGCAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGTGAAGTTGGAAGACTCAATGTATATGGAGGCAATGGGGTAGGGCCTCTGCGCTGCTGGCCTGGTGGATTGTGCCTATCTAGGTCAATAGGTGACACAGATGTGGGAGAATTTATTGTGCCAATACCACATGTCAAGCAAGTGAAACTTTCAAATGCTGGTGGAAGGCTCATTATAGCCTCTGATGGTATTTGGGATGCTTTATCTTCTGACATGGCTGCTAAGGCATGTCGGGGTCTTCCTGCAGAGCTTGCTGCGAAGCTAGTGGTTAAGGAAGCTCTAAGATCGAGAGGCCTGAAGGACGATACAACCTGCCTTGTTGTAGATATTATTCCTTCCGATCTTCCTGTAATATCGCCAACTCCAAGAAAGAAACATAACTTCCTAACTTCACTTCTCTTTGGAAAGAAATTTGGCAACTCTACAAACAAAGCTACTAGTAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGCTCTGCAATGCTTGCAGAAAGGCTGGGTAAGGATTTCCCGTTAGATAAAAATTCTGGGATTTTCCGCTGTGCTGTTTGCCAAGTGGATCAACCCCCTGGCGATGGTTTATCAGTGAACTCCGGGCCTTTTTTCTCTCCAGCATCCAAGCCATGGGAAGGCCCATTTCTCTGCACAAACTGCCGGAAGAAAAAAGATGCCATGGAAGGAAAAAGGCCCAGCAGTCCCACCGTTACAGCATAG 1296 0.466 MMNKSELSSTRMKPPPVPLATLIGRELRHEKVEKPFVKYGQAGLAKKGEDYFLIRTDCHRVPGDPSTAFSVFAIFDGHNGISAAIFAKENLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDTELQQKGETSGTTATFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVYGGNGVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKACRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVISPTPRKKHNFLTSLLFGKKFGNSTNKATSKLSAVGVVEELFEEGSAMLAERLGKDFPLDKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSPTVTA* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0557 431 Pfam Protein phosphatase 2C 65 283 IPR001932 -
Lja1g0557 431 ProSiteProfiles PPM-type phosphatase domain profile. 35 300 IPR001932 -
Lja1g0557 431 PANTHER ALPHABET, ISOFORM E-RELATED 6 430 - -
Lja1g0557 431 SUPERFAMILY PP2C-like 40 300 IPR036457 -
Lja1g0557 431 Gene3D - 36 304 IPR036457 -
Lja1g0557 431 CDD PP2Cc 46 300 IPR001932 -
Lja1g0557 431 SMART PP2C_4 26 298 IPR001932 -
Lja1g0557 431 SMART PP2C_SIG_2 53 300 IPR001932 -
Lja1g0557 431 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 6 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0557 Lja-Chr1 5070441 5073521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0557 9 430 PP2C-type Phosphatase Gene Family AT1G09160 77.251 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0557 - - gmx:100807886 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0557 1 5070441 5073521 Lja1g0557 1 5070441 5073521 ECH