Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0555 ATGGAGACAGAACAAGTTTTGCCATTCTCTGCTGTTTCTGTGGTTGAAGATGTTCTTCAACAACATGGTGCCAAATTGACCGATTTCTACTTTGCATCAAGAAAAACTGAAGAAGCTTCACTGAGAAGGTATGAAGCGGCTGGTTGGCTGCGAAAGACGGTTGGAGTTGTTGGAGGGAAGGACTTGCCAGCTGAGCCTTCTGAAGAAGACTTCAGGATTGGATTGCGAAGCGGGATTATCCTATGCAATGTTCTTAACAAAATTCAACCAGGAGCTGTGCCAAAGGTGGTTGAAGCCCCCGGAGATTCTGTTTTAATTCCTGATGGGGCAGCACTGTCTGCATATCAATACTTTGAAAATGTTAGGAATTTTCTTGTAGCTGTGGAGGAAATGGGCCTTCCCCCCTTTGAATTTTCTGATCTGGAACAGGGAGGAAAAGCTTCAAGGATAGTGAATTGTGTTTTAGCTCTCAAGTCCTATGCTGAATGGAAACTTGGAGGAGGAAATGGCTCATGGAAATATGGTGTGACAAAGCCACCTACCTCAGGGAAACCAATTTTGAGGAAAAACTCAGAACCATTCATGAAGTCTTTGTGGACCATGTCGACGGGGGACAGAGATGGTTACATGAGTGATCCAGGACATGATCGAAATGAAGAGGGTTCACTTCCTTCCTTAAGTTCACTGGTTCGTCAATATTTGTGTGACAAGAAGCCAGAAGAAATTCCCATTGTAGTGGAGTGTTTGCTTGGCAAGGTCATAGAGGAGTTTGAACATCGCATGCAAAACCAACAAGAAACTTCTAAAACAACTCAAGAAGATAAGGCATCTTCTGAAACTGAATATCCAATTTCGAAATCTGCTTATGTTGATGAAGAGATGGGAAAAGAGGAGGATGGAGAGGAATTGCAAGATAAGCAGGAGGAAGACTGTGATGAGATGTCCAAGGACGATGAAGAATCAAGAAGCCAAGTAATGAAGCAACAAGAGTTAACCCAAACAAAAGATCGGAGCAGCCAAGTTATGAAGCAACAAGACTTAGCCCAACAACAAGATAGGAGCATCCAGGAATTGAAAAACATCGTCCATCAAACAAAATCAGGAGTACTGTTTCTGCAAAAGGAATACCAGAAGGAGATCATCTATCTAAGTAAGCACATGCATAGCCTAGCTTCTGCTGCTTCAGGATATCATAAAGTTCTTGAAGAAAACCGCAAGTTGTATAATCAAGTGCAGGATCTTAAAGGAAATATTAGGGTGTACTGCAGAGTTAGACCCTTCTTGGGTGGGCAACCAAGCCATTCTAGCGCTGTCAGTAACATTGAGGAGGGAAGCATCTCACTCGTAATGCCTTCCAAATATGGGAAAGAGGGGGGGAAGAAGACATTTAATTTCAATAGAGTGTTTGGTTCTTGTGCATCCCAAGAGGAAGTTTTCTCAGATACGCAGCCTCTAATTCGTTCTATTCTTGATGGTTATAATGTCTGTATATTTGCCTATGGCCAGACAGGATCAGGAAAGACATACACTATGTCTGGGCCAGACAATCTTACTGAGGAAACCATAGGTGTCAACTACCGTGCACTGAAAGATCTTTTCGTTCTCTCAGAGCAGAGGAAAGATGTTATTAGTTATGAAATTTCGGTTCAGATGCTTGAGATTTACAATGAGCAAGTCAGAGACCTATTAGCAACAGATGAAATTCGAAACAGTTCTCACAATGGCATCAACGTGCCGGAGGCAAGCCTTGTTCCAGTTTCATCAACTTCAGATGTCATATATTTGATGAACTTGGGACATAAGAATAGGGCTGTTGGTGCTACTGCCATGAATGATCGTAGCAGTCGTTCTCACAGCTGCCTGACAGTCCATGTTCAAGGAAGGAACCTAACTTCAGGAAGTACTATTCGCGGTAGCATGCATCTTGTTGACCTGGCAGGAAGTGAGAGAGCTGATAAAAGTGAGGCCACAGGGGATAGACTTAAGGAGGCTCAACATATCAACAAGTCACTTTCCGCCTTAGGAGATGTAATTTCTTCGCTTGCCCAAAAGAATTCACATGTTCCCTACAGAAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGCGGGCAAGCGAAGACACTCATGTTTGTTCATATTAGTCCGGAGCCTGAAGCTCTTGGAGAAACATTAAGTACACTGAAGTTCGCTGAACGGGTCTCCACAGTTGAACTTGGTGCTGCTCGGACTAATAAAGATAATGCACAAGTGTATGAGCTTAGAGAACAGATTGCTACTCTGAAGGCAGCCTTAGCAAAGAAGGAAGGAGAAGCAGAACATCCAACACAATCTGTCAATAGTGGCCATGAAAAGCCAAAGTTGAAACCATACATATCTTCTCCTCCTAGACAACATAGCACGGAGGGTAAGAAAAAAGGAGCGCCGAAGTTGAAAAGACGAAGCCTTGATCTCCATGACATGTATAGGAGACCTCCATCTCCATGGCCACATGTTAGCATTAATAAGGTGAATGGAATTGGAAAAGAGGATGATAAGGAATTGATTTCTGGGGATTGGATTGATAAGTTTACGATGAACAGGAATGACAGCTTAACTAGTGATGATAGCCTCGTGTCGCAATGGGAAGAAGAAAGCAAACAATTTTCTCCATTGTTAAGTCCTAGTTCTCTTGCAGAGCCTCCAAAACTATACATGGAACAGTCCTCTCATAAAAAGGATGGCCAAGAATTTGAAGAATTATGTAGGCACGGGTGTGAGATGGCCATCACAGATGAATCTGAAGAGCTTGAGATTGCAACAAGTGATTCTTCAGAATCAGACTTGAATTGGCTATCACATGCAGCAAAACCAACTGGCCCTTCAAACGGGTCAGGCTCTAAAACAAAGAAATCAACGAATCTTAGACCAACAAAGAGCTTAGAAACCAGGAGTATGATCCCATCATTAATTCCTACTCCATCAAAGAAACAACCCACCATAGTTAATCAAGCCAGAAAGCATCAAGGACCTGTTGCTGCTAAGAAAAGGACCGGGAATGGAATCTAA 3051 0.4281 METEQVLPFSAVSVVEDVLQQHGAKLTDFYFASRKTEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNVLNKIQPGAVPKVVEAPGDSVLIPDGAALSAYQYFENVRNFLVAVEEMGLPPFEFSDLEQGGKASRIVNCVLALKSYAEWKLGGGNGSWKYGVTKPPTSGKPILRKNSEPFMKSLWTMSTGDRDGYMSDPGHDRNEEGSLPSLSSLVRQYLCDKKPEEIPIVVECLLGKVIEEFEHRMQNQQETSKTTQEDKASSETEYPISKSAYVDEEMGKEEDGEELQDKQEEDCDEMSKDDEESRSQVMKQQELTQTKDRSSQVMKQQDLAQQQDRSIQELKNIVHQTKSGVLFLQKEYQKEIIYLSKHMHSLASAASGYHKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGGQPSHSSAVSNIEEGSISLVMPSKYGKEGGKKTFNFNRVFGSCASQEEVFSDTQPLIRSILDGYNVCIFAYGQTGSGKTYTMSGPDNLTEETIGVNYRALKDLFVLSEQRKDVISYEISVQMLEIYNEQVRDLLATDEIRNSSHNGINVPEASLVPVSSTSDVIYLMNLGHKNRAVGATAMNDRSSRSHSCLTVHVQGRNLTSGSTIRGSMHLVDLAGSERADKSEATGDRLKEAQHINKSLSALGDVISSLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARTNKDNAQVYELREQIATLKAALAKKEGEAEHPTQSVNSGHEKPKLKPYISSPPRQHSTEGKKKGAPKLKRRSLDLHDMYRRPPSPWPHVSINKVNGIGKEDDKELISGDWIDKFTMNRNDSLTSDDSLVSQWEEESKQFSPLLSPSSLAEPPKLYMEQSSHKKDGQEFEELCRHGCEMAITDESEELEIATSDSSESDLNWLSHAAKPTGPSNGSGSKTKKSTNLRPTKSLETRSMIPSLIPTPSKKQPTIVNQARKHQGPVAAKKRTGNGI* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0555 1016 SMART ch_5 42 160 IPR001715 GO:0005515
Lja1g0555 1016 MobiDBLite consensus disorder prediction 767 815 - -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 261 348 - -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 937 999 - -
Lja1g0555 1016 ProSitePatterns Kinesin motor domain signature. 638 649 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g0555 1016 Gene3D Kinesin motor domain 412 780 IPR036961 -
Lja1g0555 1016 Gene3D - 32 163 IPR036872 -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 931 1016 - -
Lja1g0555 1016 Pfam Calponin homology (CH) domain 43 162 IPR001715 GO:0005515
Lja1g0555 1016 SUPERFAMILY Calponin-homology domain, CH-domain 43 178 IPR036872 -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 294 316 - -
Lja1g0555 1016 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1001 - -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 326 348 - -
Lja1g0555 1016 CDD KISc_C_terminal 415 740 - -
Lja1g0555 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 772 IPR027417 -
Lja1g0555 1016 Coils Coil 254 274 - -
Lja1g0555 1016 Pfam Kinesin motor domain 423 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 PRINTS Kinesin heavy chain signature 608 625 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 PRINTS Kinesin heavy chain signature 492 513 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 PRINTS Kinesin heavy chain signature 688 709 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 PRINTS Kinesin heavy chain signature 639 657 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1001 - -
Lja1g0555 1016 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Lja1g0555 1016 SMART kinesin_4 415 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g0555 1016 Coils Coil 752 772 - -
Lja1g0555 1016 Coils Coil 397 417 - -
Lja1g0555 1016 MobiDBLite consensus disorder prediction 767 781 - -
Lja1g0555 1016 ProSiteProfiles Kinesin motor domain profile. 417 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0555 Lja-Chr1 5055260 5061578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0555 405 738 Calmodulin-binding Proteins AT5G65930 42.857 9.31e-77 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0555 1 5055260 5061578 Lja1g0555 1 5055260 5061578 ECH