Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0554 ATGGCAAAAGGAAAGGGTAGTGGCAGACACTTTATTAGGAGAAAGGTTCGGTCGAAGGAAGATGGTTCCGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGGTGGGGGTGTGTCTGATTGTCCGGAGGATGATTGTTTTTCGTTAGATGAATGTGCATCCGAGGAGGGTTTTGATGGTTTTATAGATTTGGGGGATGAAGAGGAGGAGGAGGAGGAGGTGAAGGGAATTCGAGCGGGGAGGAGATTCAAGAGATCGAAGCCTAAAAATGGCATGTGTGATCAGCGGAAAGGTGCGAGTAAAACCCCGCGAAAGAGGGCAAGGATTACTTACGAAGAACAAAAAGAACAAGAGGGAGAAGGAGTTGAAGATGAAGATGAGGATTTCAATTATGAAGAACAAAAAGAACAAGAGGGAGAAGGAGTTAAAGATGAAGATGAAGATGAGGATTTCAATTATGATGATGAGGATAAAGATGAAGATGAGGATTTCAATTACGATGATGATGAGGATGAAGATGATGAAGAATTTACACCAGAGGAAGAAGATTACTCGGATGAGGAAGAAGAAACAAGGGAAAGGAAGAAGAAAAATGGTAGCATGAAAGCGGTCAAGAAGGTTTTGCGGAGAAGGGTTTCGGTGACCTCTAACCGAGGTCGAAAAAGGAGGAGATCTAGAGTTTCGAAGAATCCCTTGAGAAAGAAAAGACGAAAGAATGGAAAATCAAGGGGTAAAGTACAAGATAATGATCTAGATGGTTTGATAGATAGTGGCCCAGCCAAGGGGATAAATGGTAGGAAAAAACGGGGCCGGGAAAGGAGAAGGTTGCTTATTGATGATTCCAATTCAGATTCACATTGTGTGTCGGTATCATCTGATTATGAGTTTACTATATCTGAAGAAGAAAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTTCAAATTTAAGAAGAAACTTGAGAAGTGCTTCCCTTCTAATGGAAAATGAAGAGGTTGGAGTATATGAAGATCTAAATCAGCAACCGAAGCCTCCAGGCCGGAAGGGTAAGGAAAAGTCTGAGGAACCTCAAGGAAGAAAGGGTAAAGAAAAGGTGGGCAATTCAAAAAGTGAAGTGGGAAAGCAGGTGTGTGGAATTTGCCTGTCTGAAGAAAATAAAAGAAGAGTGAGGGGAGTACTAGATTGTTGCACTCACTATTTTTGCTTTACTTGCATTATGGAGTGGTCAAAGGTGGAAACTCGGTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAATAAACCTACACGATCAACAGCAGGGCTTGATTTGAGAGAAGTGGTCATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGACTGTACTTTGTTCAGAGTGCCATCAAGGTGGCGATGATGGCCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTGCCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCTGTTGCTTTGGCATCTTTAAACTCTCAAATCCAAGAACGCGTGGCTGATTCAAGGGTGTCAACCCAAAACCCATCTGTTAGATCATCACCTGTTCTTCATTCTCAAGAAAGTATAGACCTCAACTTGACTTCTTCACCGGGTCCATCTTTTAGTCAAGGGTTCAGGCATTTTTCATCTTCTAGGTTTTCTGGCAGAAGCGCCGAAGGAGCTTCTCCAGCATCTGGAGGAGGAACTCTATCAGAGAGACGCTGGATACACCGTCAAATTCATCAGCTACTTTCAACAGATAGAATGACTTCTACAACTGGCCGAACTAATAGTATTTCAGCTCTGAGTTCAACCAGTAACCTGCAAAACACTCAAATTGATCAAAGCAGGGAACCCACCACTCAACATACAAGGACACAGGATGTGGGAACATCATATCACACATTAGTTGAGGAGAGATTACGCAATGATATTTCTCCATTAATGCAGAATGGAGATCCCTTCTCCACAATAGTAAGCAATTCAAGAAGGCCAATTATTGAGGATTCAACTATGCTCTCCAACAGGCCTGTAAATGGGGTTCTATGGCCTGGACTGTTGGGAACTCCCACCTTATCAGATCATCAACCAATCCATCAGTTCAGCAGCAGACCAAACAGTGCCATTGAAAGTAGTTTGTCCCCTGCTATCAAAGAAGAAAGTAACTTTCACATTGTAAAGGAGCAGGTGCGGGCGATGGTTAAAAGCCATCTGCAGAGCTTATCTCGAGATATTGATTTAGGCCATAGTACTTTCAAGGACATTGCTAGGAGTTCTACCCATACCCTACTGGCAGCTTGTGGTCTAGAGCACAGGAAGAGTGAGGTTTGCACTGTGGCCCCACCACCTGTCTGTCACCACATGGAACAAATAGCTGGTGAACAAACTAGTCTGATTAAAGATTGCTGCTCCTCTTGCTTTGATCGTTTTGTAGTAGATGTGGTGAAAAAGATTCTGGACACAACAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2574 0.4312 MAKGKGSGRHFIRRKVRSKEDGSDDSDEDYVVSDDGGGVSDCPEDDCFSLDECASEEGFDGFIDLGDEEEEEEEVKGIRAGRRFKRSKPKNGMCDQRKGASKTPRKRARITYEEQKEQEGEGVEDEDEDFNYEEQKEQEGEGVKDEDEDEDFNYDDEDKDEDEDFNYDDDEDEDDEEFTPEEEDYSDEEEETRERKKKNGSMKAVKKVLRRRVSVTSNRGRKRRRSRVSKNPLRKKRRKNGKSRGKVQDNDLDGLIDSGPAKGINGRKKRGRERRRLLIDDSNSDSHCVSVSSDYEFTISEEEREQVREAKKLCSNLRRNLRSASLLMENEEVGVYEDLNQQPKPPGRKGKEKSEEPQGRKGKEKVGNSKSEVGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTINKPTRSTAGLDLREVVIQVPERDQVYQPSEEELRSYIDPYETVLCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQIQERVADSRVSTQNPSVRSSPVLHSQESIDLNLTSSPGPSFSQGFRHFSSSRFSGRSAEGASPASGGGTLSERRWIHRQIHQLLSTDRMTSTTGRTNSISALSSTSNLQNTQIDQSREPTTQHTRTQDVGTSYHTLVEERLRNDISPLMQNGDPFSTIVSNSRRPIIEDSTMLSNRPVNGVLWPGLLGTPTLSDHQPIHQFSSRPNSAIESSLSPAIKEESNFHIVKEQVRAMVKSHLQSLSRDIDLGHSTFKDIARSSTHTLLAACGLEHRKSEVCTVAPPPVCHHMEQIAGEQTSLIKDCCSSCFDRFVVDVVKKILDTTMSSQWLRLGL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0554 857 CDD RING-HC_Topors 378 420 - -
Lja1g0554 857 SMART PHD_3 470 515 IPR001965 -
Lja1g0554 857 MobiDBLite consensus disorder prediction 199 243 - -
Lja1g0554 857 ProSitePatterns Zinc finger RING-type signature. 397 406 IPR017907 -
Lja1g0554 857 SUPERFAMILY RING/U-box 377 426 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 88 117 - -
Lja1g0554 857 SMART ring_2 378 419 IPR001841 -
Lja1g0554 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 442 IPR013083 -
Lja1g0554 857 PANTHER F18C1.6 PROTEIN 1 846 - -
Lja1g0554 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 518 IPR013083 -
Lja1g0554 857 MobiDBLite consensus disorder prediction 344 368 - -
Lja1g0554 857 Pfam Ring finger domain 377 420 IPR001841 -
Lja1g0554 857 ProSiteProfiles Zinc finger RING-type profile. 378 420 IPR001841 -
Lja1g0554 857 MobiDBLite consensus disorder prediction 118 189 - -
Lja1g0554 857 Coils Coil 300 320 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 531 550 - -
Lja1g0554 857 Pfam PHD-finger 471 516 IPR019787 -
Lja1g0554 857 MobiDBLite consensus disorder prediction 25 44 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 611 654 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 59 286 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 334 368 - -
Lja1g0554 857 PANTHER F18C1.6 PROTEIN 1 846 - -
Lja1g0554 857 ProSiteProfiles Zinc finger PHD-type profile. 468 517 IPR019787 -
Lja1g0554 857 SUPERFAMILY FYVE/PHD zinc finger 442 516 IPR011011 -
Lja1g0554 857 MobiDBLite consensus disorder prediction 59 74 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 1 44 - -
Lja1g0554 857 MobiDBLite consensus disorder prediction 577 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0554 Lja-Chr1 5027749 5031525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0554 388 514 C2H2 Transcription Factor Family AT3G01460 27.273 4.67e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g0554 PHD 5.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0554 - - mtr:MTR_7g112410 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0554 1 5027749 5031525 Lja1g0554 1 5027749 5031525 ECH