Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0552 ATGGGTATCATGGATCTCAAGGAGAAGGAATGGTCATCATCATCTGTGATCAAAAAGTGTTGTGCTGACTGCAAAACCACCAAAACCCCTCTCTGGAGAGGAGGACCAGCTGGGCCCAAGACGTTGTGCAATGCTTGTGGAATCAGGTACAGGAAGAGAAGAGCGTGTACGGTGGGAATGAACAAAGGACAAGAAAGGAAGAGAGAGAGGGCGCAGAAAACGGTTGTTGTTGGTGGTGATGGTGATGGTGGTGGTGGGAGTGAAAGTGAAAGTGATGATTTGATGGAATCTTTGAGAATGAAGATAGTGGCGTTGGGTGAGGAGGTTTTGTTGCAACGGTCACCTTGGGAGGAGGTGGTGAAGAAACAGAGGAGGAACAAGTTGGGAGAGGAAGAACAAGCAGCTGTTTGTTTGATGGCACTTTCCTGCGGCTTTGTTTTCGCTTGA 447 0.4832 MGIMDLKEKEWSSSSVIKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACTVGMNKGQERKRERAQKTVVVGGDGDGGGGSESESDDLMESLRMKIVALGEEVLLQRSPWEEVVKKQRRNKLGEEEQAAVCLMALSCGFVFA* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0552 148 PANTHER GATA TRANSCRIPTION FACTOR 16 10 148 - -
Lja1g0552 148 Pfam GATA zinc finger 21 54 IPR000679 GO:0006355|GO:0043565
Lja1g0552 148 CDD ZnF_GATA 21 74 IPR000679 GO:0006355|GO:0043565
Lja1g0552 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 54 - -
Lja1g0552 148 ProSitePatterns GATA-type zinc finger domain. 21 46 IPR000679 GO:0006355|GO:0043565
Lja1g0552 148 PANTHER OS01G0976800 PROTEIN 10 148 - -
Lja1g0552 148 Gene3D - 17 75 IPR013088 GO:0006355|GO:0008270
Lja1g0552 148 ProSiteProfiles GATA-type zinc finger domain profile. 21 51 IPR000679 GO:0006355|GO:0043565
Lja1g0552 148 MobiDBLite consensus disorder prediction 61 75 - -
Lja1g0552 148 SMART GATA_3 15 73 IPR000679 GO:0006355|GO:0043565
Lja1g0552 148 MobiDBLite consensus disorder prediction 61 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0552 Lja-Chr1 5015240 5016854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0552 18 148 C2C2-Gata Transcription Factor Family AT3G06740 48.485 1.21e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g0552 GATA 2.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0552 - - lang:109330084 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1332 4 11916814 11917795 Lja1g0552 1 5015240 5016854 ECH
Lja1g0552 1 5015240 5016854 Lja1g0552 1 5015240 5016854 ECH