Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0549 ATGGTATCAAACAGACAATCTCACCCCGAGCACAAAGGCAGTGGCAAGATTCCAATTGAAAAATTGAAACCGAGCCATGGTGATACAAAACAAGCATCATCAATCAGTGGCCTTAGAAATTTGATAAACGCATTGCAGACTAATGATCATGAATCCTACTTTGAAACTTTCCTCCAACGAGTGGTACGTGAGGAAGTGGAACACAAAGTCCAGGATTACCTACTTTCAAGAACAAGGGTTAATAATCAGGCTGGCATATCTGGAGCCAAACCCTTTCAGTTGTGTTTTATTAATAAGTTGCCTGATACCATCTTTACACAGTCTAATATAATATCAGAGGATGAATCACCCCTTCAAATTGCACTATTTGATGTTAAATCTCAATCTGTAGTCAGTGATGGTCCCTTCTCCTCAATAAAGATTGAGATTTGTGCCCTCAATGGTGACTTTGGGTCTTCTGGCAATGAGGATTGGACTGAAGTTGAATTCAATGACAATATCTTACACCAAAGAGATGGTAAACAACCATTGTTGATTGGAGAGAGGTTTATTACTCTTAAAAATGGAGTTTGTTGCATCCCTAAAATTGGCTTCAGTGATAACTCAAGATGGGTAAGAAGCCGAAAGTTCAGGTTAGGAGCCAAAGTTGTGCAACCAAATTCCAATGGAGAATATGTTAAGGAAGGTGCAAGTGAAGCTTTTGTGGTCAAAGATAACAGAGGAGAGGCCTACAAGAAACACTACCCTCCATCCTTGAAGGATGATATATGGCGTTTGAAGAAAATTGCCAAAGAAGGAATAATCCACAAGCGGCTTTCTGTCCATGGAATTCACACTGTGAAGGATTTCTTGCAGTTATACACAACCAACACATCTTCATTATATGAGAAATTGGGAAACATTCCAAAGAAGTCCTGGTTAGCCATAATTGAACATGCCAATACCTGTTTGATAGATGATTACAAGCTTTATAGCTACCGCACACCAGAGCAACCAATAGTTCTGTTATTCAATTCCATCTTCAAACTTGTGGGAGTGACATTTGATTGCCAAAATTATTATTCACTAGAGACTCTAGCGCCGGGCGAGAAGCATTTGGTTGAAATAGTGAAGCAAGATGCATACAAAAACGTGAATAACTTGAAACCAATTGATGAAACTATATTGAACTGCTTAAACCTAGAGGCATGTCTAAAATCAAGGCACTCAGTTGCTCCAGTTCAAGATCTGCAATATATTGATATCTCAGCATCACAAGGAACATGGCCAGGTTATGTTCAACCATTTATCTCTGCTTCATATGATGAAGGAATGTATGCTTCTCAAATCTATGCTGATCCAGTGCCAGAAGTAAGAGAAATACCACAAAACAATCTTTTGGATGATGAGTTTTCCTTAGGAATGTACATAGAAGGGGATAACTGCTACTTCAATGGATCACATTTTCCACTTATGCAATGTTGTTATCCAACACAGTATGAGAGTTCAGAAAATGGCTTTTACTTTGGTTCTTGTGATGGAGCAGAATTTAGCAGCCGTAACACTTTGCTGAATCATGCTATGGATATATCAAGAAGTAGGAAACCAAAAGTAGAGTGGTGCAAGATTCGAGCTGCGATCAAATGGGTCATATCAGTGAGAAAAGATGCAGCTGCTAGGAAGAATGCAATGTTGGTTTAA 1680 0.3893 MVSNRQSHPEHKGSGKIPIEKLKPSHGDTKQASSISGLRNLINALQTNDHESYFETFLQRVVREEVEHKVQDYLLSRTRVNNQAGISGAKPFQLCFINKLPDTIFTQSNIISEDESPLQIALFDVKSQSVVSDGPFSSIKIEICALNGDFGSSGNEDWTEVEFNDNILHQRDGKQPLLIGERFITLKNGVCCIPKIGFSDNSRWVRSRKFRLGAKVVQPNSNGEYVKEGASEAFVVKDNRGEAYKKHYPPSLKDDIWRLKKIAKEGIIHKRLSVHGIHTVKDFLQLYTTNTSSLYEKLGNIPKKSWLAIIEHANTCLIDDYKLYSYRTPEQPIVLLFNSIFKLVGVTFDCQNYYSLETLAPGEKHLVEIVKQDAYKNVNNLKPIDETILNCLNLEACLKSRHSVAPVQDLQYIDISASQGTWPGYVQPFISASYDEGMYASQIYADPVPEVREIPQNNLLDDEFSLGMYIEGDNCYFNGSHFPLMQCCYPTQYESSENGFYFGSCDGAEFSSRNTLLNHAMDISRSRKPKVEWCKIRAAIKWVISVRKDAAARKNAMLV* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0549 559 MobiDBLite consensus disorder prediction 9 27 - -
Lja1g0549 559 Pfam Calmodulin binding protein central domain 251 316 IPR046830 -
Lja1g0549 559 Pfam Calmodulin binding protein C-terminal domain 322 383 IPR046829 -
Lja1g0549 559 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g0549 559 Pfam Calmodulin binding protein-like N-terminal domain 92 239 IPR046831 -
Lja1g0549 559 PANTHER OS02G0177800 PROTEIN 1 557 IPR012416 GO:0005516
Lja1g0549 559 PANTHER CALMODULIN-BINDING PROTEIN 1 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0549 Lja-Chr1 4995640 5000743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0549 54 386 Calmodulin-binding Proteins AT5G26920 42.478 7.05e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0549 - - lja:Lj1g3v4777410.1 847.81