Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0547 ATGGAGATGGAGAAAAGGCGTTCTAAGGGAAGCTTCCTCAGCTTGTTTGATTGGAATGCCAAATCTCGGAAGAAGCTGCTTTGGAACGATCCAAACTTACCTGAAGTTTCAAAGCAAGGAAAGGAAAATGTGGTGACCTTGCCAGAGTCACAGCTTAGAAGGATAAAGGTGGATGAAAATGGAGCAAGTCCTAGTAATATGGCAAGTGGTGATTTTAGTTCAAACCTATCAATTTGTAGTGATGAAGGATGCGGGAGTAAAGCACCTGGATTAGTAGCGAGGCTCATGGGTTTGGATTCGTTGCCAGCTTCAGCGAATACTGAGCTCTCCTGCACTTCATTGAATGGCTCTAGCTCTCATGGGGTGTCTCATTGTAACGAGGTAGCTCTTCCAATGGATGAGTTTTGCCCCAGGGACTACATGAACATGACACATAAGCTGGAGATGTCTTCTTCGGATGCCATGGAATTAAGGGCACGGAAAATGGAGAATCGGCCTATGAAGAGATTTCAAACTGAAATGTTGCCTCCAAAGTCGGCTAAACCCATTCCAGTTACTCACAATAAACTGCTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAGAATGCAGCTCACTTAATGGAGGCAGCTGCTAAGATAATTGAGGCAAGCCCCCAGCACTATACTAGGGATAGAATGCCATCTGTTAGGTCTTCATCTGTTCCCTTGAGAATTCTTGATTTGAAAGAGAGATTGGAAGCTGCACAATGTGCATTCACACCTGAAAAGCTTGTAGGTCCAAGCAATGCTAACCCTGCAAATGGCATCCTCTATGAGAGGAGCAGTAATTCACATAAATGTACTTCTGCATTCAAAGGTTCAAGAGATTCGGAGAAAAACAGTTCTAGCCATTCTGCAACTAGAAGAAGATCAGATTCACTTGCATTACAAGCCAAACCCAATGTTCAAAACAGGGATACATTGAATTCAAATGGTAATAGGAAATATGTGAAGCAGAAAGAACAGAAAGAGATAAAGTCAAACCAGCTCTCAAGGAGCCAGAAACCTAGTTCAGACCGAGATGTGCACCAGAGAACTTGCACAAGTAGGAATAGCAATGTGCTTGGGCAGAATAATCAAAAGCAAAATTGCATGACTACCACGAGTAAACCGATTTCCAAAATAGATTCCAATAAGGCAACAGCACGAGCTTCATCTTCAGAAAGTTCTATTGGAACAAGGAAGACTACAGGCAGGGGTGCTAAAAATGTCAATGTTCAGCCTAAAAGATCAAGCTTGAGGGCAACTGATAACAGAAAAGAGTTTCTGCCGTCCAAAACTGAGAGCATTTCCCAAAAGAAAAAGTTTATCAGCAGAAGTTCTCATGAGGCAAGAAGTCCTGATCATGCTGTCAATAATTTTCAAAGTAAATCCATAAAATGCAATTTTACTACTGATGGAAGAATTCATCAGGATGCCTTTAACATGAAGGAAGGCAAGGATGTTATTTCATTTACCTTTATGTCTCCTTTGAGGAAAAGCATGCATGACTCACCATCCTCTACTGAGCAAGCCATGGAAATCAGAAATAGTGTTGGTGTCAACTCTCCTGGGCATAATGATAATTCTTATCACAGAAATTTATCATTATCTCCGCCAGGGTTAAATATGATAGATAGTGATGCTTTAAGTCTCCTGTTGGAGAAAAAGCTGCAAGAATTGACATCTAGACTTAACTTACCTCAATGTACCCTGGCCACAGAGGGCACCTCTACTGGTTTGAGTTCTAGTTTGCAAGACAAAGTTCCTAGTATGGTAAGCATCACATCTAAGGAACAAGACAAGAGCTTTTACCCTGACCAGTTTAGTGATAAACTGGATTGCATGCATAACTATCATTGTTCAAGTGGTGATCCAGTTCTTAACCTGAATCAACAAATTCAGACATCAGAAGTAAGGGAAGATCCTCGCTGTAGCAGCAAAGATGCAAATGATCTAGGTTTTCAACATCCCAATGCTGTTACAGTTCTTGAAACTTCTTTTGCCAGTGAAAGCTATCTGGATAGTGAAGACAGTACATATGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAAGTGTCTGATTATTCCCAGACACACGAATCTGTATCGCTTGCAAATGAGGGAAAATGGTCAGAGCAAAACTCTTCCACTTTTACTGGCGGAAATATGGCTGTCAAACAAATAACTCGAATATCAGATTTGGGAGGTTGTGAAGTATCAAGTAACATGGAACTCGAGTATATACAGGACATACTTGAGAATGCAGATTTTATGTCAGAAGAATTTGTCATGGGTCAAGCTGATACAGTCATAATGCCAAATCTCTTTGATCTATTGGAAAATCAGGGCAGTAGTGGAACAGAAAACTATGGAGATGAGTACTCAAAGCTTGAAAGGAAGGTTTTATTTGACTGTGTGAGTGAGTGCCTAGAGTTGAGATTTACGCAAGCTTTTGTGGGAAGGTGCAAATCATGGCCTAGATGGGTGACATCAGTTCAGAGGAAGAGGTGGTTGGCAGAAGAATTGTACAAGGAGATGTTTGGTTTTAGAAACATGGAAGAGGTGATGGTGGATGAGCTTGTGAGCAAGGATATGAGCACTGGATGTGGGAAATGGCTTGACTTTGACATTGAAGCATTTGAAGAGGGTTCAGAGGTTGAGCAGGACATTCTAGCTTCTTTGATTAATGAATTGGTTTCTGATTTATTGCTTGGTTAA 2748 0.4123 MEMEKRRSKGSFLSLFDWNAKSRKKLLWNDPNLPEVSKQGKENVVTLPESQLRRIKVDENGASPSNMASGDFSSNLSICSDEGCGSKAPGLVARLMGLDSLPASANTELSCTSLNGSSSHGVSHCNEVALPMDEFCPRDYMNMTHKLEMSSSDAMELRARKMENRPMKRFQTEMLPPKSAKPIPVTHNKLLSPIKSPGFLPPKNAAHLMEAAAKIIEASPQHYTRDRMPSVRSSSVPLRILDLKERLEAAQCAFTPEKLVGPSNANPANGILYERSSNSHKCTSAFKGSRDSEKNSSSHSATRRRSDSLALQAKPNVQNRDTLNSNGNRKYVKQKEQKEIKSNQLSRSQKPSSDRDVHQRTCTSRNSNVLGQNNQKQNCMTTTSKPISKIDSNKATARASSSESSIGTRKTTGRGAKNVNVQPKRSSLRATDNRKEFLPSKTESISQKKKFISRSSHEARSPDHAVNNFQSKSIKCNFTTDGRIHQDAFNMKEGKDVISFTFMSPLRKSMHDSPSSTEQAMEIRNSVGVNSPGHNDNSYHRNLSLSPPGLNMIDSDALSLLLEKKLQELTSRLNLPQCTLATEGTSTGLSSSLQDKVPSMVSITSKEQDKSFYPDQFSDKLDCMHNYHCSSGDPVLNLNQQIQTSEVREDPRCSSKDANDLGFQHPNAVTVLETSFASESYLDSEDSTYGSTVYSSMQDEEVSDYSQTHESVSLANEGKWSEQNSSTFTGGNMAVKQITRISDLGGCEVSSNMELEYIQDILENADFMSEEFVMGQADTVIMPNLFDLLENQGSSGTENYGDEYSKLERKVLFDCVSECLELRFTQAFVGRCKSWPRWVTSVQRKRWLAEELYKEMFGFRNMEEVMVDELVSKDMSTGCGKWLDFDIEAFEEGSEVEQDILASLINELVSDLLLG* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0547 915 PANTHER DUF4378 DOMAIN PROTEIN 1 914 - -
Lja1g0547 915 MobiDBLite consensus disorder prediction 428 461 - -
Lja1g0547 915 MobiDBLite consensus disorder prediction 281 467 - -
Lja1g0547 915 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 914 - -
Lja1g0547 915 MobiDBLite consensus disorder prediction 362 427 - -
Lja1g0547 915 Pfam DUF761-associated sequence motif 80 104 IPR032795 -
Lja1g0547 915 MobiDBLite consensus disorder prediction 302 330 - -
Lja1g0547 915 Pfam Domain of unknown function (DUF4378) 754 907 IPR025486 -
Lja1g0547 915 MobiDBLite consensus disorder prediction 286 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0547 Lja-Chr1 4981187 4985496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0547 3 915 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 31.590 1.65e-97 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0547 - - gmx:102663635 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0547 1 4981187 4985496 Lja1g0547 1 4981187 4985496 ECH