Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0544 ATGTCTAACAGCAACAATGCCGCTGGGGTTGACAATACTTTCAGAAGGAAATTTGATCGAGAAGAGTATCTCGAACGAGCTCGCGAGCGTGAGAGAGAGGAGGAAGAGGGTGGTAGAGCAAAACCTAAATCTAAAGGTCCTCCAGTGCAGAGGAAGCCCTTGAAGCATAGAGATTTTGAAGTAGACCTCGAATCCCGATTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGTCAGCAGGCTGGATACTACTGCTCTGTTTGCGAGTGTGTTGTAAAGGACTCTGCAAACTATCTGGATCATATTAATGGAAAGAAACACCAAAGAGCCTTGGGCATGTCTATGCGAGTCGAACGTGCTTCTCTCCAACAGGTTCAGGATCGGTTTGAAGTTCTGAAGAAACGTAAAACTCTTGGCAGCTTCACAGAGCAAGATCTTGACGAACGCATTTTAAAACAGCAACAAGAGGAGGAAGAACGAAAGCGACTTCGTCGGGAAAAGAAAAAAGAAAAGAAGGAGAAGGCTGTGGAAGAACCTGAAACTGATGCTGACGTTGCTGCCCTGATGGGATTCGGTGGTTTTCGGTCATCTAATAAGAAATGA 609 0.4598 MSNSNNAAGVDNTFRRKFDREEYLERAREREREEEEGGRAKPKSKGPPVQRKPLKHRDFEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQDRFEVLKKRKTLGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPETDADVAALMGFGGFRSSNKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0544 202 MobiDBLite consensus disorder prediction 1 56 - -
Lja1g0544 202 MobiDBLite consensus disorder prediction 13 42 - -
Lja1g0544 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Lja1g0544 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Lja1g0544 202 Coils Coil 148 180 - -
Lja1g0544 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Lja1g0544 202 Gene3D Classic Zinc Finger 79 117 - -
Lja1g0544 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 1 201 IPR040107 GO:0000398|GO:0005681
Lja1g0544 202 MobiDBLite consensus disorder prediction 154 184 - -
Lja1g0544 202 MobiDBLite consensus disorder prediction 154 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0544 1 147 C2H2 Transcription Factor Family AT3G05760 78.912 8.45e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g0544 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0544 K12848 - gmx:100527057 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0544 1 4957089 4960799 Lja1g0544 1 4957089 4960799 ECH