Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0539 ATGGTTTGCCAAGAAGAGCTCTTGATTGAAAAAGTCTGCTCCCTCTACTCACAAATCTCCACTCTCGAATCTCTCAAACCCAGCAAAAATGTCGACACCCTCTTCACCGAGCTTGTCCTCACATGCATGCCACCTAGCCCCATCGATGTCACAAACCTCACAAAAAACGTTCAAGACATCCGATCCCACCTCATAAGACTCTGTGGTGAAGCTGAAGGCCATTTGGAGAGTCACTACTCAACAATCCTAGGCTCACACAAAAACCCTCTTGACCATCTTCACATCTTCCCTTACTATAACAACTACCTCAAACTTGGTCTCCTTGAGTACACTATCCTTACCCAAAATTCCATCCATGTCCCTGAAAAAATTGCTTTTATTGGTTCAGGTCCTCTCCCTCTCACTTCCATTGTGTTAGCCTCAAACCACTTAATCTCCACAACTTTCCATAACTATGATATAGACTCTTCAGCCAATTCAAGTGCTCAGAAACTGGTTTTATCTGACCCTGATTTGTCAAACCGCATGGTTTTTCACACCAGTGATATACTAGACGTGACAAAAGAGTTAGAGGACTATGATGTTGTGTACTTGGCTGCACTTGTTGGCATGAACAAGGAGGAAAAGAATCGGATCATTGATCATTTGGCTAAGTACATGGCTCCAGGTGCTGTTCTGATGCTGAGAAGTGCTCATGGGGCTCGTGCTTTTCTATACCCGGTGGTTGAGGCTTCTGATCTTCAAGGCTTTGAGGTTCTCTCTGTTTTCCACCCCACTGATGAGGTTATCAATTCTGTTGTTATAGCAAGGAAATATAGTACTACTCCTTCAACACACTCACTTGATCAGGGTCTTGTTGGCTCTATGATTTTACCAAACAAGTGTTCTGATGAGATTCAAGTCTTCATTCCCCTCAATCATGTTGAGGAGTTAACCGTTGAGGAGCAACTCTCGTGA 957 0.4368 MVCQEELLIEKVCSLYSQISTLESLKPSKNVDTLFTELVLTCMPPSPIDVTNLTKNVQDIRSHLIRLCGEAEGHLESHYSTILGSHKNPLDHLHIFPYYNNYLKLGLLEYTILTQNSIHVPEKIAFIGSGPLPLTSIVLASNHLISTTFHNYDIDSSANSSAQKLVLSDPDLSNRMVFHTSDILDVTKELEDYDVVYLAALVGMNKEEKNRIIDHLAKYMAPGAVLMLRSAHGARAFLYPVVEASDLQGFEVLSVFHPTDEVINSVVIARKYSTTPSTHSLDQGLVGSMILPNKCSDEIQVFIPLNHVEELTVEEQLS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0539 318 PANTHER SYNTHASE, PUTATIVE-RELATED 1 317 - -
Lja1g0539 318 PANTHER NICOTIANAMINE SYNTHASE 3 1 317 IPR004298 GO:0030410|GO:0030418
Lja1g0539 318 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Lja1g0539 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 262 IPR029063 -
Lja1g0539 318 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Lja1g0539 318 Gene3D Vaccinia Virus protein VP39 5 273 IPR029063 -
Lja1g0539 318 CDD AdoMet_MTases 153 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0539 Lja-Chr1 4934965 4936345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0539 1 296 Nicotianamine Synthase Gene Family AT5G04950 63.245 7.02e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0539 K05953 - gmx:100794250 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0539 1 4934965 4936345 Lja1g0539 1 4934965 4936345 ECH